PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C01515.3.p | ||||||||
Common Name | EUGRSUZ_C01515 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | YABBY | ||||||||
Protein Properties | Length: 141aa MW: 15599 Da PI: 9.0007 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 79.4 | 1.1e-24 | 9 | 98 | 6 | 97 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 +eq+Cy+ CnfCn +lavsvP +sl+ +vt+rCGhC++l svn+a a q la ++ ++ k++ +++++++ ++s +++ +++ ++ Eucgr.C01515.3.p 9 PTEQLCYIPCNFCNIVLAVSVPCSSLLDIVTIRCGHCSNLWSVNMAAAFQSLANWQDA-QAPKQDCRMDMGSSSK-YNSRITMRAPSTNVTE 98 689********************************************99999988873.3344444444444332.2333333333333222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.2E-27 | 9 | 90 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MASCVDITPT EQLCYIPCNF CNIVLAVSVP CSSLLDIVTI RCGHCSNLWS VNMAAAFQSL 60 ANWQDAQAPK QDCRMDMGSS SKYNSRITMR APSTNVTEQR VVNRQRRFRG SRRAIQTLVT 120 GKHSVLLLKT GHTFPIFISD * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C01515.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010048072.1 | 2e-72 | PREDICTED: axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 7e-35 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A059CNX6 | 1e-100 | A0A059CNX6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010048072.1 | 9e-72 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-37 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C01515.3.p |
Publications ? help Back to Top | |||
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