PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C01515.2.p | ||||||||
Common Name | EUGRSUZ_C01515, LOC104436916 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | YABBY | ||||||||
Protein Properties | Length: 185aa MW: 20764.7 Da PI: 8.5905 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 199.3 | 1.6e-61 | 9 | 157 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 +eq+Cy+ CnfCn +lavsvP +sl+ +vt+rCGhC++l svn+a a q la ++ + ++++++ + ++++ ++ +++ Eucgr.C01515.2.p 9 PTEQLCYIPCNFCNIVLAVSVPCSSLLDIVTIRCGHCSNLWSVNMAAAFQSLANWQD------------AQAPKQDCRMDMGSSSKYNSRITM 89 689*****************************************9999988877664............444455555555444444444444 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+n +e+ v+rPPekrqrvPsayn+fikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Eucgr.C01515.2.p 90 RAPSTNVTEQ----RVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 157 3334444443....4589****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.9E-70 | 9 | 157 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.93E-8 | 101 | 150 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.7E-4 | 106 | 149 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MASCVDITPT EQLCYIPCNF CNIVLAVSVP CSSLLDIVTI RCGHCSNLWS VNMAAAFQSL 60 ANWQDAQAPK QDCRMDMGSS SKYNSRITMR APSTNVTEQR VVNRPPEKRQ RVPSAYNQFI 120 KEEIQRIKAS NPDISHREAF STAAKNWAHF PHIHFGLMLD NNNQAKMDNH SEKHLMSRAA 180 LLNK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C01515.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010048072.1 | 1e-137 | PREDICTED: axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 7e-84 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A059CP63 | 1e-136 | A0A059CP63_EUCGR; Uncharacterized protein | ||||
STRING | XP_010048072.1 | 1e-136 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-86 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C01515.2.p |
Entrez Gene | 104436916 |
Publications ? help Back to Top | |||
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