PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C01264.1.p
Common NameEUGRSUZ_C01264
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 136aa    MW: 15532.7 Da    PI: 7.9122
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C01264.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.24.6e-2561236128
               NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                       +++Ptde l+++yL++kv gk+l+l   i+e+d+y+ ePw++ +++ + ++  y F++  k    g+r++r++ sg+Wk + ++ ++++ +g 
  Eucgr.C01264.1.p   6 KYRPTDECLITDYLQPKVMGKPLPL-GQIDECDLYSQEPWKIFNTTLELKQTFYVFTELTK---MGSRNSRTVGSGTWKGQHRT-KIFNDGGD 93 
                       799**********************.78**************7433333445577777655...589************99885.56666999 PP

               NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                         g kk++ f +g  p++++ +W+m+e+++
  Eucgr.C01264.1.p  94 FLGYKKSFKFQEGGGPSATSGRWIMKEFSM 123
                       ****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.9871135IPR003441NAC domain
PfamPF023652.3E-156122IPR003441NAC domain
SuperFamilySSF1019413.14E-286133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MNSLAKYRPT DECLITDYLQ PKVMGKPLPL GQIDECDLYS QEPWKIFNTT LELKQTFYVF  60
TELTKMGSRN SRTVGSGTWK GQHRTKIFND GGDFLGYKKS FKFQEGGGPS ATSGRWIMKE  120
FSMCDEREEW FLCVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-18613322160NO APICAL MERISTEM PROTEIN
1ut4_B4e-18613322160NO APICAL MERISTEM PROTEIN
1ut7_A4e-18613322160NO APICAL MERISTEM PROTEIN
1ut7_B4e-18613322160NO APICAL MERISTEM PROTEIN
3swm_A5e-18613325163NAC domain-containing protein 19
3swm_B5e-18613325163NAC domain-containing protein 19
3swm_C5e-18613325163NAC domain-containing protein 19
3swm_D5e-18613325163NAC domain-containing protein 19
3swp_A5e-18613325163NAC domain-containing protein 19
3swp_B5e-18613325163NAC domain-containing protein 19
3swp_C5e-18613325163NAC domain-containing protein 19
3swp_D5e-18613325163NAC domain-containing protein 19
4dul_A4e-18613322160NAC domain-containing protein 19
4dul_B4e-18613322160NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C01264.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050567.14e-91PREDICTED: NAC domain-containing protein 67
TrEMBLA0A059CNL12e-96A0A059CNL1_EUCGR; Uncharacterized protein
STRINGXP_010050567.11e-90(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.22e-20NAC domain containing protein 50