PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.C01064.1.p

Common Name

EUGRSUZ_C01064, LOC104439083

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Trihelix

Protein Properties

Length: 350aa MW: 38934.8 Da PI: 4.3608

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.C01064.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.6	1.6e-08	119	202	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ +L+e+ e+ +l+ ++ + +W+e+++k++e +e + + C++ ++ l+k+ykk+++ +++ +++ ++ +f++++ Eucgr.C01064.1.p 119 WSDYAKFTLLEVWGERFMQLGGKSVRSEDWSEIAEKVSEwARMEYTEVDCRQQLDALKKKYKKERAKMERT--RVTPSWMHFKKMD 202 77777788999999999999999************77256799******************9984..77778*****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-14	117	203	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MDDAEGDPAS SSMADPYRSK RLKRSSRGQA LPGRPGPAAA RRGVRSLDGG GGYGDDGDDG 60 GGNYGIRQNP SYGYDYQNGH GGFSGGGGGG QGYVRKRGQE ELVPAHEYGA GFPDQAPPWS 120 DYAKFTLLEV WGERFMQLGG KSVRSEDWSE IAEKVSEWAR MEYTEVDCRQ QLDALKKKYK 180 KERAKMERTR VTPSWMHFKK MDVLMDTNME DGGLACGVDS GEFCFADTTV YLDKSNAFDE 240 MRDSPGESES EMDGDEEQDD DMPPPRKENG GEGMRVLVDS IEKFGELYEK IETNKREQMM 300 ELKKMRADFQ RELDLQKKEI LERAEAEIAK IQAGGMDDGD EDDDDICSE*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MDDAEGDPAS SSMADPYRSK RLKRSSRGQA LPGRPGPAAA RRGVRSLDGG GGYGDDGDDG  60
GGNYGIRQNP SYGYDYQNGH GGFSGGGGGG QGYVRKRGQE ELVPAHEYGA GFPDQAPPWS  120
DYAKFTLLEV WGERFMQLGG KSVRSEDWSE IAEKVSEWAR MEYTEVDCRQ QLDALKKKYK  180
KERAKMERTR VTPSWMHFKK MDVLMDTNME DGGLACGVDS GEFCFADTTV YLDKSNAFDE  240
MRDSPGESES EMDGDEEQDD DMPPPRKENG GEGMRVLVDS IEKFGELYEK IETNKREQMM  300
ELKKMRADFQ RELDLQKKEI LERAEAEIAK IQAGGMDDGD EDDDDICSE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.C01064.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010050503.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A059CN88	0.0	A0A059CN88_EUCGR; Uncharacterized protein
STRING	XP_010050503.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-62	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Eucgr.C01064.1.p
Entrez Gene	104439083