PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C01014.1.p | ||||||||
Common Name | EUGRSUZ_C01014 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 181aa MW: 20460.4 Da PI: 7.4552 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32 | 2.2e-10 | 61 | 148 | 1 | 81 |
EEEE-..-HHHHT.T-EE--H.HH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlks.grlvlpk.kfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+lt+sd +rl + k +fa+++ g + e ++ ++ ++ g+ + ++++++ ++ ++v+t+GW+ Fvk+n+L++ D+v Eucgr.C01014.1.p 61 FEKQLTTSDIIGIqSRLLVNKtDFATSIlpllekGDDIEVGIPVKTFNPAGKAYPMTFKIWCGR-SHVITSGWNLFVKDNRLEVSDIVR 148 899999999876644555554156777799999855556677788899**********766554.69*******************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-13 | 60 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-13 | 61 | 164 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.26E-12 | 61 | 164 | No hit | No description |
SMART | SM01019 | 0.0096 | 61 | 168 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.543 | 108 | 168 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MELNKEQGVR PMQQHRQSKT IQASSCPSRP QYDPQHSATG LHLVRIVNTL IDSIGDCSEP 60 FEKQLTTSDI IGIQSRLLVN KTDFATSILP LLEKGDDIEV GIPVKTFNPA GKAYPMTFKI 120 WCGRSHVITS GWNLFVKDNR LEVSDIVRVW AFRDVWTREL CLLISSRKPE VQQPIEKEET 180 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C01014.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010050479.1 | 1e-133 | PREDICTED: putative B3 domain-containing protein At4g03160 | ||||
TrEMBL | A0A059CMH9 | 1e-131 | A0A059CMH9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010050479.1 | 1e-132 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2103 | 18 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 5e-22 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C01014.1.p |