PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00958.3.p
Common NameEUGRSUZ_C00958
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 484aa    MW: 53625.5 Da    PI: 6.8882
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00958.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.55.6e-36491911128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 
                       lp+G++F+Ptd+el+ e+L++kve+k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++      
  Eucgr.C00958.3.p  49 LPAGVKFDPTDQELI-EHLEAKVEAKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlq 139
                       799************.99*********5553344444434666646**********.555666799******************733345555 PP

               NAM  80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Eucgr.C00958.3.p 140 ggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 191
                       44778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3845210IPR003441NAC domain
PROSITE profilePS5100533.0149210IPR003441NAC domain
PfamPF023652.6E-1650191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MNNSSSSNLG SISSSDLIDA KLEEHQICGS KQCPGCGHKL DGKPDWLGLP AGVKFDPTDQ  60
ELIEHLEAKV EAKDMKSHPL IDEFIPTIEG EDGICYTHPE KLPGVTRDGL SRHFFHRPSK  120
AYTTGTRKRR KIQTECDLQG GETRWHKTGK TRPVMVNGKQ KGCKKILVLY TNFGKNRKPE  180
KTNWVMHQYH LGQHEEEKEG ELVVSKIFYQ TQPRQCNWSE RTIPATSTSA HAAEGSGDPN  240
NSSRRGGGSG GSGSSSTSKE VISRTDEISG SAVITAVTAA ISSYGTATTD IQQLKSEHFG  300
FIPFRKGFDE VGIGEASTGR EAPTSGTCED IRDHHQYQRL HHPVAPHDHQ LHHQHHVHHP  360
IATAAFHISR PSHPISAIIA PPAPLHQTAA SINILDEDSF HVSRMMLQNE FQQQQQHQQH  420
QQQEQHHKMG GRSASGLEEL IMGCTSSSTD IKEESSITNP QEPEWLMKYS PFWPDPDNPD  480
HHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-124719113140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00958.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047653.10.0PREDICTED: uncharacterized protein LOC104436544
RefseqXP_010047654.10.0PREDICTED: uncharacterized protein LOC104436544
RefseqXP_010047655.10.0PREDICTED: uncharacterized protein LOC104436544
RefseqXP_010047656.10.0PREDICTED: uncharacterized protein LOC104436544
RefseqXP_010047657.10.0PREDICTED: uncharacterized protein LOC104436544
RefseqXP_018725377.10.0PREDICTED: uncharacterized protein LOC104436544
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A059CMC30.0A0A059CMC3_EUCGR; Uncharacterized protein
STRINGXP_010047652.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-168NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]