PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C00958.2.p | ||||||||
Common Name | EUGRSUZ_C00958, LOC104436544 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 487aa MW: 54009.9 Da PI: 6.8882 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 115.4 | 5.7e-36 | 49 | 191 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 lp+G++F+Ptd+el+ e+L++kve+k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ Eucgr.C00958.2.p 49 LPAGVKFDPTDQELI-EHLEAKVEAKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlq 139 799************.99*********5553344444434666646**********.555666799******************733345555 PP NAM 80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Eucgr.C00958.2.p 140 ggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 191 44778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-38 | 45 | 210 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.01 | 49 | 210 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-16 | 50 | 191 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MNNSSSSNLG SISSSDLIDA KLEEHQICGS KQCPGCGHKL DGKPDWLGLP AGVKFDPTDQ 60 ELIEHLEAKV EAKDMKSHPL IDEFIPTIEG EDGICYTHPE KLPGVTRDGL SRHFFHRPSK 120 AYTTGTRKRR KIQTECDLQG GETRWHKTGK TRPVMVNGKQ KGCKKILVLY TNFGKNRKPE 180 KTNWVMHQYH LGQHEEEKEG ELVVSKIFYQ TQPRQCNWSE RTIPATSTSA HAAEGSGDPN 240 NSSRRGGGSG GSGSSSTSKE VISRTDEISG SAVITAVTAA ISSYGTATTD IQQLKSEHFG 300 FIPFRKGFDE VGIGEASTGR EAPTSGTCED IRDHHQYQRL HHPVAPHDHQ LHHQHHVHHP 360 IATAAFHISR PSHPISAIIA PPAPLHQTAA SINILDEDSF HVSRMMLQNE FQQQQQQQQH 420 QQHQQQEQHH KMGGRSASGL EELIMGCTSS STDIKEESSI TNPQEPEWLM KYSPFWPDPD 480 NPDHHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-12 | 47 | 191 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C00958.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047653.1 | 0.0 | PREDICTED: uncharacterized protein LOC104436544 | ||||
Refseq | XP_010047654.1 | 0.0 | PREDICTED: uncharacterized protein LOC104436544 | ||||
Refseq | XP_010047655.1 | 0.0 | PREDICTED: uncharacterized protein LOC104436544 | ||||
Refseq | XP_010047656.1 | 0.0 | PREDICTED: uncharacterized protein LOC104436544 | ||||
Refseq | XP_010047657.1 | 0.0 | PREDICTED: uncharacterized protein LOC104436544 | ||||
Refseq | XP_018725377.1 | 0.0 | PREDICTED: uncharacterized protein LOC104436544 | ||||
Swissprot | Q9M0F8 | 0.0 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A059CN32 | 0.0 | A0A059CN32_EUCGR; Uncharacterized protein | ||||
STRING | XP_010047652.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-168 | NAC domain containing protein 75 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C00958.2.p |
Entrez Gene | 104436544 |
Publications ? help Back to Top | |||
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