PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00887.1.p
Common NameEUGRSUZ_C00887, LOC104436483
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 605aa    MW: 66739.2 Da    PI: 7.0283
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00887.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.5e-06314336426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       +lC  ++ +G C++G++C+F H+
  Eucgr.C00887.1.p 314 RLCFKYLSSGSCPRGENCNFRHD 336
                       78889999************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073804.25E-477233No hitNo description
PROSITE profilePS5010314.577310338IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-4312337IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4314336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-6314337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6314339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971342370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6342371IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5343371IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-4344369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.428.103.2E-6388483IPR011146HIT-like domain
PfamPF046774.3E-40388502IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541973.23E-8393465IPR011146HIT-like domain
PfamPF046763.1E-16518601IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MAPPRVLLCG DARGRLNQLF KRVSSVNKSA GPFDALLCVG QFFPDAPELL EEFADYAEGR  60
SPVPLPTYFV GDYGIGAPKV LSAASRSHAN LGFKMDGLKI CENLYWLKGS GKFTLHGLSV  120
AYISGRHSLD GQQFGTYNQD DVDALRALAE EPGVVDLFLS NEWPSGITNG AAKTDVPPGI  180
SEASGRDSTI AEIVAEIKPR YHIAGTMGVF YAREPYSNAD AVHVTRFIGL APVGNKEKQK  240
FIHALSPTPA STMSSSEISM KPPNTTLSPF TAVEKTAGAK EAGKRTAADT NDAQYWRYDV  300
SQKRQKHAVG DGDRLCFKYL SSGSCPRGEN CNFRHDLDAR EQYRRGVCFD FLNKGQCERG  360
PDCNFKHSLQ EEEESGSRNG NRSRGAASVN RSKECWFCLS SPNVESHLII SVGERYYCAL  420
PKGPLVEDHV LIIPIEHLPN TLSLPPENET ELNKFQNCLK LYHKNQRKEV VFFEWVSKRG  480
THANLQAVPV PSSRAAALQS IFSLAAEKLG FKFNSLSTDG RKMLRTEFDG KSSLFYVELP  540
EGTVLSHIVE DNENFPAQFG REVVAGLLNV ADKADWRNCA LSKEEEIKLA EEFKRRFAAF  600
DPNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U2e-11381601656887CWF19-like protein 2
6id1_U2e-11381601656887CWF19-like protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00887.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047569.10.0PREDICTED: zinc finger CCCH domain-containing protein 64 isoform X1
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A059CMV50.0A0A059CMV5_EUCGR; Uncharacterized protein
STRINGXP_010047569.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1168822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.27e-07C3H family protein