PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C00725.1.p | ||||||||
Common Name | EUGRSUZ_C00725, LOC104436346 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 196aa MW: 22642.4 Da PI: 9.8095 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.8 | 1.6e-20 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+++++ +G+++Wk++a++ g++R++k+c++rw++yl Eucgr.C00725.1.p 17 RGAWTAEEDQKLAQVIETHGPRRWKLVAAKAGLNRCGKSCRLRWLNYL 64 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 70 | 113 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ Eucgr.C00725.1.p 70 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNS 113 78999*****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.068 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.1E-29 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-17 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-19 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.35E-12 | 19 | 64 | No hit | No description |
SMART | SM00717 | 1.1E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.188 | 69 | 119 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.3E-14 | 70 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 72 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.46E-9 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MPTTPTRSRC SKRDANRGAW TAEEDQKLAQ VIETHGPRRW KLVAAKAGLN RCGKSCRLRW 60 LNYLRPNIKR GNISDQEEDL ILRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNSRLSKKIK 120 QKESQSKFLE PDQSQDPRNN PSAMHSVADN DGGTSKREEE MKSDVSRDDF LDNFNEGPLN 180 LEWMSKFLEV DESWF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-30 | 14 | 119 | 4 | 108 | B-MYB |
1gv2_A | 4e-30 | 17 | 119 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C00725.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047393.1 | 1e-143 | PREDICTED: transcription factor MYB114 | ||||
Swissprot | P10290 | 4e-52 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A059CLE9 | 1e-141 | A0A059CLE9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010047393.1 | 1e-142 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 4e-50 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C00725.1.p |
Entrez Gene | 104436346 |