PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.C00724.1.p

Common Name

EUGRSUZ_C00724, LOC104436345

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB

Protein Properties

Length: 255aa MW: 28928.9 Da PI: 8.1043

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.C00724.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	5.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l d++k +G g W+ I+++ g++R++k+c++rw++yl Eucgr.C00724.1.p 14 RGAWTALEDQILTDYIKAHGEGKWRNIPKKSGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	55	1.8e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ Eucgr.C00724.1.p 67 RGNITPEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTI 111 7999****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.156	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.31E-29	12	108	IPR009057	Homeodomain-like
SMART	SM00717	6.4E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-14	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-24	15	68	IPR009057	Homeodomain-like
CDD	cd00167	7.58E-10	16	61	No hit	No description
PROSITE profile	PS51294	26.067	62	116	IPR017930	Myb domain
SMART	SM00717	1.4E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	8.2E-16	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-25	69	116	IPR009057	Homeodomain-like
CDD	cd00167	2.34E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MGRNPCCTKE GLNRGAWTAL EDQILTDYIK AHGEGKWRNI PKKSGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TPEEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT ILGKKVQGEE 120 PKQPKKDETK KPKTKQPNKN LTPTPAANTN PNAIRPQPAK CNKITVYPEP QPEASVTDFS 180 SVQDLVKSSE GSPSILSEEE DFRNLPMDFS LSELLLSDVP ESEFWKLCQF DNTLDQPFLF 240 SEEMMNGWAA EDGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-27	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.C00724.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010047392.1	0.0	PREDICTED: transcription factor WER
TrEMBL	A0A059CM76	0.0	A0A059CM76_EUCGR; Uncharacterized protein
STRING	XP_010047392.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-61	myb domain protein 3

Link Out ? help Back to Top
Phytozome	Eucgr.C00724.1.p
Entrez Gene	104436345