PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.C00722.1.p | ||||||||
Common Name | EUGRSUZ_C00722, LOC104436343 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 32374 Da PI: 4.756 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.4e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed++l d++k +G g W+ I+++ g++R++k+c++rw++yl Eucgr.C00722.1.p 15 RGAWTADEDKRLTDYIKVHGEGKWRNIPKRAGLKRCGKSCRLRWLNYL 62 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.2 | 5.8e-16 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T +E++l+++++++lG++ W++Ia +++ gRt++++k++w++ Eucgr.C00722.1.p 68 RGNITSDEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 112 7999******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.88 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.29E-29 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.83E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 19.509 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-14 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 70 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.02E-10 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence Send to blast |
MGRSPCCSKD EGLNRGAWTA DEDKRLTDYI KVHGEGKWRN IPKRAGLKRC GKSCRLRWLN 60 YLRPDIKRGN ITSDEEDLII RLHRLLGNRW SLIAGRLPGR TDNEIKNYWN STLAKREQGE 120 KKPSLSTTEK INPMATSSIM QDETQNLVLV GDSTLHHMEQ PSGTSEAAKS GQSSEYESSD 180 VSSPASMSRE EPNLEPLMVD CTVGELDLVE ILDASDFRLN ESGNTSQVMN TVDNEGMSKN 240 ENVGGTSYGQ AHNWWSEGLE MDNWVSDLAE MTSGLGPFAS ILYGTEDWIP * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-27 | 13 | 116 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.C00722.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047390.1 | 0.0 | PREDICTED: anthocyanin regulatory C1 protein | ||||
Swissprot | P10290 | 9e-63 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A059CM24 | 0.0 | A0A059CM24_EUCGR; Uncharacterized protein | ||||
STRING | XP_010047390.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16720.1 | 3e-60 | myb domain protein 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.C00722.1.p |
Entrez Gene | 104436343 |