PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00664.1.p
Common NameEUGRSUZ_C00664, LOC104436316
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 390aa    MW: 43513.7 Da    PI: 4.6697
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00664.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.91.6e-33431342102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k++ei+ed++++ ++swse  nsf+v+d ++fa ++Lpk+Fkh nf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+++ll
  Eucgr.C00664.1.p  43 FLTKTFEIVEDPATDPIVSWSEGRNSFIVWDAHQFAATLLPKHFKHGNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQRHLL 126
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++ikr+++
  Eucgr.C00664.1.p 127 KTIKRRRN 134
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.7E-3639132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5839132IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3339132IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-2943132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-184366IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-188193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-1894106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEMKGGVVPK EEEASSDVGQ PPPPPPPPPQ PMEGLGEAGP PPFLTKTFEI VEDPATDPIV  60
SWSEGRNSFI VWDAHQFAAT LLPKHFKHGN FSSFIRQLNT YGFRKVDPDR WEFANEGFLG  120
GQRHLLKTIK RRRNVLHSPR QPGGACVELG HYGLDSELER LRRDRGLLVA EVARLRQQQE  180
QSRDHIFAME QRIQRTERKQ QQMLAFLAKA CNNPSFIRQL MQRNARGRDI RGVEIGHKRR  240
LTATPSLENL QDEDTVAALG RGGAGDSAIP MQEEMVTLES EMQTMFSAAL DDESSSDVNE  300
LSAAPVLATR GGNTDAVNQT ILEELLSEDL MTGNPEEEIL VGDRPEIDME AEDLVPGRRN  360
ASEESQDLSQ LEAVTPSSSL RQDKFMEEW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-253413217129Heat shock factor protein 1
5d5v_B2e-253413217129Heat shock factor protein 1
5d5v_D2e-253413217129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131LKTIKRR
2159164RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00664.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047357.10.0PREDICTED: heat shock factor protein HSF30
SwissprotP411521e-121HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A059CMT10.0A0A059CMT1_EUCGR; Uncharacterized protein
STRINGXP_010047357.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116722732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-102heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]