PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.C00661.1.p

Common Name

EUGRSUZ_C00661, LOC104436313

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 545aa MW: 59584.8 Da PI: 8.6003

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.C00661.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Eucgr.C00661.1.p 89 FICEICNKGFQRDQNLQLHRRGH 111 89*******************88 PP
2	zf-C2H2	12.4	0.00047	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +++ Eucgr.C00661.1.p 166 WKCEKCSKRYAVQSDWKAHSKVC 188 58*****************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.5E-7	88	111	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-5	88	111	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	6.6E-5	89	111	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.022	89	111	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	89	111	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	91	111	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	131	161	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.1E-4	154	186	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.5E-7	161	186	No hit	No description
SMART	SM00355	130	166	186	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MEMKGLLAVN DNSMSNLTSS ASGEICASSG SGSEIYGNNN NLYSHHSFAS ANHQPSPPPK 60 KKRNLPGNPD PDAEVIALSP KTLMATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR 120 PKDEPIRKKV YVCPEPTCVH HDALRALGDL TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD 180 WKAHSKVCGT REYKCDCGTL FSRRDSFITH RAFCDTLAEE CAKTAPPNQP NFLIPSSSQP 240 PTTSLVTSRI NLQNISSLSI KREQEQQQHQ QQVHIFNPRQ QTIGPSWTPL PYISRGTLSS 300 PSSFLDPSAQ VLQNPSSDNP SAGISINLPH AEHTGTGFSS PSSSPHMSAT ALLQKAAQMG 360 VTMNNQPSSS LGVNCSAPQA HHSRMHDNNL VNLGSRDRHH HRPQDHQMGT GRFADQSLSS 420 FGNKAVAAPA GVLGGAGEPG PPLSLLQQDM NVMMMMNPLS SLDGADDDLN EMILNNNYGD 480 DISERPSSGH GGDDFKGAAT LESAKRYRLE GDKDSMATRD FLGLKAFSPK DFLNHKVAGF 540 DPMV*

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MEMKGLLAVN DNSMSNLTSS ASGEICASSG SGSEIYGNNN NLYSHHSFAS ANHQPSPPPK  60
KKRNLPGNPD PDAEVIALSP KTLMATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR  120
PKDEPIRKKV YVCPEPTCVH HDALRALGDL TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD  180
WKAHSKVCGT REYKCDCGTL FSRRDSFITH RAFCDTLAEE CAKTAPPNQP NFLIPSSSQP  240
PTTSLVTSRI NLQNISSLSI KREQEQQQHQ QQVHIFNPRQ QTIGPSWTPL PYISRGTLSS  300
PSSFLDPSAQ VLQNPSSDNP SAGISINLPH AEHTGTGFSS PSSSPHMSAT ALLQKAAQMG  360
VTMNNQPSSS LGVNCSAPQA HHSRMHDNNL VNLGSRDRHH HRPQDHQMGT GRFADQSLSS  420
FGNKAVAAPA GVLGGAGEPG PPLSLLQQDM NVMMMMNPLS SLDGADDDLN EMILNNNYGD  480
DISERPSSGH GGDDFKGAAT LESAKRYRLE GDKDSMATRD FLGLKAFSPK DFLNHKVAGF  540
DPMV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-34	162	231	3	72	Zinc finger protein JACKDAW
5b3h_F	6e-34	162	231	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	128	KQRPKDEPIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.C00661.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010047352.1	0.0	PREDICTED: protein indeterminate-domain 7
Refseq	XP_010047353.1	0.0	PREDICTED: protein indeterminate-domain 7
Refseq	XP_018725294.1	0.0	PREDICTED: protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-114	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A059CLH6	0.0	A0A059CLH6_EUCGR; Uncharacterized protein
STRING	XP_010047352.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-111	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Phytozome	Eucgr.C00661.1.p
Entrez Gene	104436313

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]