PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C00380.1.p | ||||||||
Common Name | EUGRSUZ_C00380, LOC104436113 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ARR-B | ||||||||
Protein Properties | Length: 689aa MW: 74964.1 Da PI: 5.775 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.7 | 6.3e-29 | 202 | 255 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ +LH++Fv+av+qL G ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl Eucgr.C00380.1.p 202 KPRVVWSVDLHRKFVSAVNQL-GLEKAVPKKILDLMNVEGLTRENVASHLQKYRL 255 79*******************.********************************8 PP | |||||||
2 | Response_reg | 79.1 | 1.5e-26 | 17 | 125 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 vl vdD+p+ +++l+++l++ +y +v+++ ++ al++l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++a+g+++++ + + Eucgr.C00380.1.p 17 VLAVDDDPTCLKVLENLLRSCQY-QVTTTNQAIMALKMLRENRdkFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAYGDPKLVMKGIT 107 799********************.***************999889*******************87754.558******************** PP TTESEEEESS--HHHHHH CS Response_reg 92 aGakdflsKpfdpeelvk 109 Ga d+l Kp+ +eel + Eucgr.C00380.1.p 108 HGACDYLLKPVRMEELKN 125 ***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 6.26E-37 | 14 | 144 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 4.8E-44 | 14 | 156 | No hit | No description |
SMART | SM00448 | 3.9E-34 | 15 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 44.774 | 16 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.7E-24 | 17 | 125 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.99E-29 | 18 | 131 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-30 | 199 | 260 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.838 | 199 | 258 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.66E-19 | 200 | 259 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.4E-25 | 202 | 255 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.4E-7 | 204 | 254 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
MTVEDGGNDR FPVGMRVLAV DDDPTCLKVL ENLLRSCQYQ VTTTNQAIMA LKMLRENRDK 60 FDLVISDVNM PDMDGFKLLE LVGLEMDLPV IMLSAYGDPK LVMKGITHGA CDYLLKPVRM 120 EELKNIWQHV IRRKTSNSKN QSQLPNQDKD NGESGQGAQG AQTTANPDGK LNKRRKDQNE 180 EEEEEDGEDN ENENEDPSSQ KKPRVVWSVD LHRKFVSAVN QLGLEKAVPK KILDLMNVEG 240 LTRENVASHL QKYRLYLKRI SNVQQANMVA AFGAKDPSYM RMTALNGFGD FRTLAGSGRF 300 SGTSLYPQGI MLGRLNSPVG LGLQGIAASG PIQPSHLQNV SKSINSLGKL QPNPPPANQN 360 TSLLQPNHGK PGPHIRDITK FDNPTALKVS PIADNRVTAS SSSNLSQSVP SSHLLLQGNP 420 QQSRSGDEFG IQSSFGAVSL QSETLNVGAI GGCNFIDKSR CNENWHGAVQ LPQLPSANPT 480 PLTVPFNCSQ VAPTNMTEKF TLPSPFIHNG PNNISSSPVP SALGDSRGDM QCQAGLLGNV 540 IQNVDFTSSK SKWEDHNQNY QHQFNHGFGT FDSVVPANGD MEPLIQNMGS ASSLRGGSVD 600 APFAVQSNSG NAPLYQQAEV GKSASMEANM RSFENYLLGQ TKFPDGFMPN GFESLDELMD 660 GMIKQEHNEA VLTNGDFSLG TYPVGSCM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-25 | 198 | 261 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C00380.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047141.1 | 0.0 | PREDICTED: two-component response regulator ORR24 | ||||
Swissprot | A2X1N2 | 1e-140 | ORR24_ORYSI; Two-component response regulator ORR24 | ||||
TrEMBL | A0A059CM22 | 0.0 | A0A059CM22_EUCGR; Uncharacterized protein | ||||
STRING | XP_010047141.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1981 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-121 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C00380.1.p |
Entrez Gene | 104436113 |