PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C00171.1.p | ||||||||
Common Name | EUGRSUZ_C00171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 152aa MW: 17076.9 Da PI: 8.1205 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 37 | 59 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k F ++ L H++ H Eucgr.C00171.1.p 37 YSCNFCQKKFYSSQALGGHQNAH 59 99******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.84E-7 | 33 | 64 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 35 | 62 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.281 | 37 | 64 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 39 | 59 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MEHQSNPWHQ SSSANNHRQL NLELGLEPFP AKDNKLYSCN FCQKKFYSSQ ALGGHQNAHK 60 LERTLAKKSR DLCSAAKPPA ATSNGHHVRP SFQSVVYENQ PRLARHVGDD MRYAGTNPLY 120 GSSWSQGYIE VPDHDGDLRE DFSQLDLSLR L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C00171.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010050236.1 | 1e-104 | PREDICTED: zinc finger protein 2 | ||||
TrEMBL | A0A059CJZ3 | 1e-109 | A0A059CJZ3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010050236.1 | 1e-104 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6621 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 1e-23 | zinc finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C00171.1.p |