PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B04027.1.p
Common NameEUGRSUZ_B040272
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 862aa    MW: 95365.5 Da    PI: 6.7256
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B04027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.69.9e-18295394198
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+kvl+ sd+++ grlvlpk +ae++   + + e++ + ++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F+ ++  +
  Eucgr.B04027.1.p 295 FEKVLSASDAGRIGRLVLPKACAEAYfpAIAQSEGIPVPIRDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLRAGDTVIFSKID-PG 385
                       99**************************666668888***************9989999999***9.********************665.77 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       ++l +++++
  Eucgr.B04027.1.p 386 GKLIMGFRK 394
                       777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-27291397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-19292395IPR015300DNA-binding pseudobarrel domain
CDDcd100176.42E-23293394No hitNo description
PfamPF023626.8E-15295394IPR003340B3 DNA binding domain
PROSITE profilePS5086310.701295396IPR003340B3 DNA binding domain
SMARTSM010193.3E-18295396IPR003340B3 DNA binding domain
PROSITE profilePS5105013.687560610IPR011124Zinc finger, CW-type
PfamPF074962.7E-11565607IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MGSSICMNES CGTPCPEWTT GWPLRSGGLA RLCLQCGSAY EKSSYCDCFH QEESGWRDCR  60
FCGKRLHCGC IASRSLVEFV DCGGVMCISC SKNRTHPSTS TEDRGREEEK LMQLFMSNEP  120
KILPQAPRDD IRASYGEVQQ ETRHFSGEAA IGFSHGMTDP TVGSRKLTKL EDSRFLLKLK  180
DTHRSLPHPS LNISLGSPGV SSHIAPPFSG RVGEGSQTVG PPSLLQGRSR PILPKLPKSA  240
IAGPETIKIP HVRVARPPAE GRGKNQLLPR YWPKITDQEL QQLSGDLNST IVPLFEKVLS  300
ASDAGRIGRL VLPKACAEAY FPAIAQSEGI PVPIRDVKGN EWTFQFRFWP NNNSRMYVLE  360
GVTPCIQSMQ LRAGDTVIFS KIDPGGKLIM GFRKASNSND PQDNQVPIVP NGDLSREGSF  420
QPFMGTLPIV EDYTNLFRTA SGIKDPRSNP SSELLSNNDG DTRCNKMEDD VGRTCEDPAQ  480
QASPIPEKKR TRNIGSKSRR MLIHNEDVLE LRLTWEEAQD LLRPPPCVKP SIVTVEGHIF  540
EEYDEPPVFG KRTIFVSQLS GGTEQWAQCD DCSKWRKLPM DAHLPPGWIC SDNIWDSERR  600
NCSAPDELSP EELESLLRVN KDVKRQRVDE DHRNETDGET SGLDALASAA VLGESMDDPG  660
EPSSGVTTKH PRHRPGCTCI VCIQPPSGKG KHKPTCTCNV CMMVKRRFKT LMSRKKKRQS  720
DQDSETIQKD LIHYGHELGT DGTLVNASSE INHEENVISQ NKKTEVADNS NGHIDLNCHP  780
DHEHVQLEGE TRSIMGFTQE TKNLSGNDST HDVISTLQCE RLASTSSGLF GQTVEEKGKR  840
LSNGECLQSI LHETMMQAKK G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-682734022131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1704715KRRFKTLMSRKK
2704717KRRFKTLMSRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B04027.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045426.10.0PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1
TrEMBLA0A059DB030.0A0A059DB03_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010045426.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72032639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2