PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B04019.1.p | ||||||||
Common Name | EUGRSUZ_B04019 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 258aa MW: 27838.6 Da PI: 8.965 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.1 | 5.4e-42 | 50 | 150 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vh++FGasnv+k+l+++pe++r d+++slvyeA+ r+rdPvyG++g i++lqqq+++l+a+ Eucgr.B04019.1.p 50 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHRVFGASNVSKMLTEVPESQRADTANSLVYEANLRLRDPVYGCMGAISALQQQIQTLQAQ 142 7******************************************************************************************** PP DUF260 94 lallkeel 101 l+++++e+ Eucgr.B04019.1.p 143 LNAVRNEI 150 ***99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.803 | 49 | 150 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-42 | 50 | 147 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MMGVGGARER LDEIAKKIKR EKDATYGDEM GRRHMMLSLS RTGTLNTITP CAACKLLRRR 60 CAEECPFSPY FSPHEPQKFA AVHRVFGASN VSKMLTEVPE SQRADTANSL VYEANLRLRD 120 PVYGCMGAIS ALQQQIQTLQ AQLNAVRNEI LRFKYREAVT TNHVQSNVVV PHSRTALNPT 180 AALAVSVVPP PTLSSSSSTA APPDPSPPPL PPPPSLVVPS SSSSSSSTSS LFTTPTSTTT 240 YSSISSETNT VHYFETI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-44 | 50 | 157 | 11 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-44 | 50 | 157 | 11 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B04019.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010045408.1 | 0.0 | PREDICTED: LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 1e-72 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A059DAZ4 | 0.0 | A0A059DAZ4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010045408.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-72 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B04019.1.p |
Publications ? help Back to Top | |||
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