PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B03991.1.p

Common Name

EUGRSUZ_B03991, LOC104434107

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 160aa MW: 17530 Da PI: 8.2239

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B03991.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138	3.4e-43	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca+Ck+lrr+C+kdC++apyfp ++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg+i+ lq+q+++l+ + Eucgr.B03991.1.p 9 PCASCKLLRRRCSKDCIFAPYFPPHDPHKFAIVHKVFGASNLSKMLQELPVNQRGDAVSSLVYEANARVRDPVYGCVGTISYLQNQVSELQLQ 101 7****************************************************************************************** PP DUF260 94 lallkee 100 la++++e Eucgr.B03991.1.p 102 LAAAQAE 108 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.398	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.0E-43	9	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MGGSSGSSPC ASCKLLRRRC SKDCIFAPYF PPHDPHKFAI VHKVFGASNL SKMLQELPVN 60 QRGDAVSSLV YEANARVRDP VYGCVGTISY LQNQVSELQL QLAAAQAEVL SMQMHQKPHL 120 VQQDRETSFL MAGDNFNSVS HYIAASVIQD PLKRESFST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-47	5	110	7	112	LOB family transfactor Ramosa2.1
5ly0_B	5e-47	5	110	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B03991.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010045372.1	1e-116	PREDICTED: LOB domain-containing protein 12
Swissprot	Q8LBW3	1e-69	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A059DAN8	1e-115	A0A059DAN8_EUCGR; Uncharacterized protein
STRING	XP_010045372.1	1e-116	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-56	LBD family protein

Link Out ? help Back to Top
Phytozome	Eucgr.B03991.1.p
Entrez Gene	104434107

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]