PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.B03823.1.p | ||||||||
Common Name | EUGRSUZ_B03823, LOC104433955 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 372aa MW: 41281.1 Da PI: 6.9527 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 150.9 | 6e-47 | 23 | 149 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGf+F+P+d el+++yL+kk+eg + ++e+ i+evd +ePwdLp k++ +e+ew+fFs r +ky++g++++rat++gyWkatgk+++v+ Eucgr.B03823.1.p 23 YPGFKFSPSDAELISHYLAKKLEGIDKSVEQLIPEVDFSAHEPWDLPaKSIVPSESEWFFFSVRGRKYPKGSQSKRATEHGYWKATGKERNVK 115 69***************************999***************666667899************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++++g+k+tLvf+ grapkg++t+W+mhey++ Eucgr.B03823.1.p 116 S-SSAVIGTKRTLVFHLGRAPKGKRTEWIMHEYSM 149 *.999****************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-51 | 16 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.987 | 22 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-24 | 24 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 372 aa Download sequence Send to blast |
MDGVCSDGRD GRIVSMADAA SMYPGFKFSP SDAELISHYL AKKLEGIDKS VEQLIPEVDF 60 SAHEPWDLPA KSIVPSESEW FFFSVRGRKY PKGSQSKRAT EHGYWKATGK ERNVKSSSAV 120 IGTKRTLVFH LGRAPKGKRT EWIMHEYSMN AKSQNQQDSL VICRLRRSSQ FQMGGASDLT 180 QTSDVDRTDV SEGDNLAEGC ARNCSGSYNS HSVEQIESSS NSSHQKNSDG NEDFYADILK 240 DDIVKLDESS VSPTRDSLPT VPNNLEAELM SQDSQTLVQD FISPIPPFQG TANRRIRLRR 300 HKPERSSKIV LEMKANDSSA EKAEPQTGSS GPSERRTRVI ISQWLVYGIL IGLTLLFVYL 360 LGGFQLSIES R* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 6e-41 | 21 | 167 | 19 | 167 | NAC domain-containing protein 19 |
3swm_B | 6e-41 | 21 | 167 | 19 | 167 | NAC domain-containing protein 19 |
3swm_C | 6e-41 | 21 | 167 | 19 | 167 | NAC domain-containing protein 19 |
3swm_D | 6e-41 | 21 | 167 | 19 | 167 | NAC domain-containing protein 19 |
3swp_A | 6e-41 | 21 | 167 | 19 | 167 | NAC domain-containing protein 19 |
3swp_B | 6e-41 | 21 | 167 | 19 | 167 | NAC domain-containing protein 19 |
3swp_C | 6e-41 | 21 | 167 | 19 | 167 | NAC domain-containing protein 19 |
3swp_D | 6e-41 | 21 | 167 | 19 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.B03823.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010045181.1 | 0.0 | PREDICTED: NAC domain-containing protein 60 | ||||
Swissprot | Q9LXL9 | 4e-80 | NAC60_ARATH; NAC domain-containing protein 60 | ||||
TrEMBL | A0A059D9S1 | 0.0 | A0A059D9S1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010045181.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10453 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G44290.1 | 3e-77 | NAC domain containing protein 60 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.B03823.1.p |
Entrez Gene | 104433955 |
Publications ? help Back to Top | |||
---|---|---|---|
|