PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03693.1.p
Common NameEUGRSUZ_B03693
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 373aa    MW: 41584.2 Da    PI: 7.4725
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03693.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.76.6e-38261552128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       p GfrF Ptde+l+ +yLk+k++g++++l++++++vd+y+++P++L +   ++ ++e+ewyfF++rd+ky++g+r+nr t  g+Wkat kd  
  Eucgr.B03693.1.p  26 PLGFRFAPTDEDLILYYLKPKIAGDPIPLADFFADVDLYQFDPRELIEshkAAGKGEDEWYFFTPRDRKYPNGSRPNRRTPGGFWKATTKDSV 118
                       89********************************************742324444677********************************999 PP

               NAM  92 vlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                       +   ++ ++g k+ L+f +g + ++g  t   mheyrl
  Eucgr.B03693.1.p 119 IQM-ENMTIGYKRLLAFSRGaSPRRGDGTALSMHEYRL 155
                       999.9999**********995667899*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-4622187IPR003441NAC domain
PROSITE profilePS5100545.50525188IPR003441NAC domain
PfamPF023651.2E-1926155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MTSSSQELGA APPRPSSEDD FQLEFPLGFR FAPTDEDLIL YYLKPKIAGD PIPLADFFAD  60
VDLYQFDPRE LIESHKAAGK GEDEWYFFTP RDRKYPNGSR PNRRTPGGFW KATTKDSVIQ  120
MENMTIGYKR LLAFSRGASP RRGDGTALSM HEYRLAEDEK RNRTGTDEKK GAKDKRLDEW  180
VLCKVFTPKH AKHSKNGRKS DHPLKTRNEQ NHDQPDGNGD DAPTTTGKNQ GRTKGIVVDE  240
DDGYLQDLQS TPTHKLNMGR QVDVADNYQL PQSSQISALG GLETDRPAYN VLPYSSHTDP  300
DSMAHCPSEM KISVHLQVQR VATQPASLGP PTGNAPPESH PSRSCRLPAH STRHNPRPVV  360
VHSFKDLIST NP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-422218614163NO APICAL MERISTEM PROTEIN
1ut4_B3e-422218614163NO APICAL MERISTEM PROTEIN
1ut7_A3e-422218614163NO APICAL MERISTEM PROTEIN
1ut7_B3e-422218614163NO APICAL MERISTEM PROTEIN
4dul_A3e-422218614163NAC domain-containing protein 19
4dul_B3e-422218614163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03693.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018720398.10.0PREDICTED: protein ATAF2-like
TrEMBLA0A059D8U70.0A0A059D8U7_EUCGR; Uncharacterized protein
STRINGXP_010041964.15e-99(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3471122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-46NAC domain containing protein 47