PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03605.1.p
Common NameEUGRSUZ_B03605, LOC104433773
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 290aa    MW: 32390.3 Da    PI: 8.9415
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03605.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-194090155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s++ GVr+++ +g+WvAeI+d +   ++ r +lg+f+taeeAa+a+++a+  l+g
  Eucgr.B03605.1.p 40 SKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFDTAEEAARAYDEAACLLRG 90
                      79********.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.18E-204099IPR016177DNA-binding domain
CDDcd000182.92E-324097No hitNo description
PfamPF008472.9E-134090IPR001471AP2/ERF domain
SMARTSM003801.0E-3641104IPR001471AP2/ERF domain
PROSITE profilePS5103219.774198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-274198IPR001471AP2/ERF domain
PRINTSPR003673.8E-84253IPR001471AP2/ERF domain
PRINTSPR003673.8E-86480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEIQFQRHDT YHHPQPQQKP LSPIRKTKFK STPSNNTAKS KFVGVRQRPS GKWVAEIKDT  60
TQKIRMWLGT FDTAEEAARA YDEAACLLRG FNTRTNFSPH LPTSSALSLK IRTLLNQKIS  120
SRRDRPMVSH SNSKSTKKPA SQTNSATSIS SMISLSSVTN VYTSSDSDCS FSSGMMQDGR  180
IFDDAYRPDL SRCLASLGST PMSQHNHSWA FTSGLDHLPL VQEDGLPKHG PCASTTDLEL  240
SEFERMKVER QISASLYAVN GLNEYLENTY NSNETMWDIP ALSQLFCHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-15401001373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03605.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044941.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11
TrEMBLA0A059D8K70.0A0A059D8K7_EUCGR; Uncharacterized protein
STRINGXP_010044941.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75262641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-45related to AP2 11