PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B03565.1.p | ||||||||
Common Name | EUGRSUZ_B03565, LOC104433738 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 300aa MW: 32514.6 Da PI: 6.1459 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.3e-19 | 47 | 96 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa a+++a+++++g+ Eucgr.B03565.1.p 47 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRGA 96 67******.**********965...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.06E-28 | 45 | 102 | No hit | No description |
PROSITE profile | PS51032 | 20.692 | 46 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-33 | 46 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 47 | 104 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.9E-8 | 47 | 58 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-29 | 47 | 103 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.4E-12 | 49 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-8 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MDHLNFTVSS SPVNSPSPSK AKRKHQQQQT PPPLQTHQDD GAAPARFLGV RRRPWGRYAA 60 EIRDPTTKER HWLGTFDTAE EAALAYDRAA RSMRGAKART NFVYSDMPPG SSVTSLVSPD 120 EAHSDFAALF ISQHHHQQQE QPHHHHHGKS SNNPNHQLFY TPGSMSACNV DFTSGLPAEN 180 GWAADGYLGG GPYHPATSIA DFGDAARPQS YDEAELPPFP PDLSSCYGSG LDMGHGGWTD 240 MGFLGLQEQS IVPGPSNGLN MGFDPNELVE HGPLFGRMPQ VSDKGVDGFD LGSSSAYYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 41 | 102 | 9 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B03565.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010044897.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor LEP | ||||
TrEMBL | A0A059D962 | 0.0 | A0A059D962_EUCGR; Uncharacterized protein | ||||
STRING | XP_010044897.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28160.1 | 3e-34 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B03565.1.p |
Entrez Gene | 104433738 |