PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03551.1.p
Common NameEUGRSUZ_B03551, LOC104433724
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 788aa    MW: 88090.6 Da    PI: 7.0811
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03551.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.2e-23131232199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++ +++a+e+       ++  + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   +
  Eucgr.B03551.1.p 131 FCKTLTASDTSTHGGFSVLRRHADEClpqldmtKQ--PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSLFVSSKKLVAGDAFIFL--R 219
                       99****************************97433..34459************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        +++el+v+v+r+
  Eucgr.B03551.1.p 220 GENGELRVGVRRA 232
                       49999*****996 PP
2Auxin_resp1141.3e-37257339183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha+st+++F+v+Y+Pr+s++eF+++++k+ ++ k  +s+GmRf+m fe+e+++e+r+sGtv+g +d+dp rWp+SkWr+Lk
  Eucgr.B03551.1.p 257 AWHAISTGTMFTVYYKPRTSPAEFIIPFDKYIESAKFDYSIGMRFRMTFEGEEAPEQRFSGTVIGSEDVDPPRWPGSKWRCLK 339
                       89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.88E-39123260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.0E-40124245IPR015300DNA-binding pseudobarrel domain
CDDcd100176.20E-21129231No hitNo description
SMARTSM010191.4E-22131233IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956131233IPR003340B3 DNA binding domain
PfamPF023621.3E-21131232IPR003340B3 DNA binding domain
PfamPF065072.5E-35257339IPR010525Auxin response factor
PfamPF023094.6E-11663765IPR033389AUX/IAA domain
SuperFamilySSF542772.8E-11671750No hitNo description
PROSITE profilePS5174523.027674767IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MASHEVSVVG SDRRERERTG CEDALYKELW HACAGPLVTV PREGELVYYF PQGHIEQIEA  60
SMNQVADRQI PFYNLPSKIL CRVINVQLRA EPETDELFAQ VTLLPVPNQD ETAVEKETGH  120
PLPPRPRVHS FCKTLTASDT STHGGFSVLR RHADECLPQL DMTKQPPTQE LVAKDLHGNE  180
WRFRHIFRGQ PRRHLLQSGW SLFVSSKKLV AGDAFIFLRG ENGELRVGVR RAMRQLNNVP  240
SSIMPSHSMH IGVLATAWHA ISTGTMFTVY YKPRTSPAEF IIPFDKYIES AKFDYSIGMR  300
FRMTFEGEEA PEQRFSGTVI GSEDVDPPRW PGSKWRCLKV RWDEITSIHR PDRVSPWNIE  360
PAVTAPDNLP ASRPKRPRAS MSSSTDSSVR MREGPLGNGT DPPADIGFSK ALQGQEFSTL  420
KGSLTLNNDM ENAEMPDAWY EFPGDNRKSM HFGQRKCRPN TWVPQLVQEA TLINLVPDSG  480
TFHHRHGIFS SFLRRDSEIT KRAKKQNSAE ETKTDLIPSP GSVRQGPSLN MLGSGIVASL  540
ENESRQQQSL GNVKGDTKRE MNSGNCFLPM HSPSLAQQEL IKANGNGSCK LFGISLMSGT  600
VATESDNGHV HGSQKPVLQS NLVDYSEPNV LGSPIKCLKI APSPIAYGEQ GRAFPSSEQP  660
VRDVEGKHQA VSTRSCIKVH KQDIPVGRSV DLSRFHGYSE LITELDEIFD FNGDLVAPSK  720
EWLVVFTDDE GDMMLVGDDP WEEFCGMVHK IFIYSREEVK RMAPRPLVPK SEEISPKTSH  780
KRYSGGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1712336117354Auxin response factor 1
4ldw_A1e-1712336117354Auxin response factor 1
4ldw_B1e-1712336117354Auxin response factor 1
4ldx_A1e-1712336117354Auxin response factor 1
4ldx_B1e-1712336117354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor (PubMed:26959229, PubMed:26716451, PubMed:27645097, PubMed:28167023). Involved in the control of fruit ripening process (PubMed:26959229, PubMed:26716451, PubMed:28167023). Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26959229, PubMed:26716451). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). Regulates vegetative growth, lateral root formation and flower organ senescence, possibly partially by regulating gene expression of auxin and ethylene response factor (ERF) genes (PubMed:28167023). Plays a negative role in axillary shoot meristem formation (PubMed:27645097). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03551.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression in tomato fruits is up-regulated by exogenous application of ethylene and down-regulated by inhibition of ethylene receptors with 1-methylcyclopropene (1-MCP) (PubMed:26959229, PubMed:26716451). Up-regulated by plant hormone abscisic acid (ABA) in tomato fruits (PubMed:26959229). Expression is not up-regulated by plant hormone auxin in tomato fruits (PubMed:26716451). Up-regulated by auxin and gibberellic acid (GA), and down-regulated by ethylene in seedlings (PubMed:28167023). Down-regulated during decapitation-induced axillary shoot development and by excision of immature leaves. Down-regulation is inhibited by the application of auxin on the cut surface (PubMed:27645097). {ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044876.10.0PREDICTED: auxin response factor 2
SwissprotQ2LAJ30.0ARF2A_SOLLC; Auxin response factor 2A
TrEMBLA0A059D8V30.0A0A059D8V3_EUCGR; Auxin response factor
STRINGXP_010044876.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53482647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]
  3. Xu T, et al.
    SlARF2a plays a negative role in mediating axillary shoot formation.
    Sci Rep, 2016. 6: p. 33728
    [PMID:27645097]
  4. Ren Z,Liu R,Gu W,Dong X
    The Solanum lycopersicum auxin response factor SlARF2 participates in regulating lateral root formation and flower organ senescence.
    Plant Sci., 2017. 256: p. 103-111
    [PMID:28167023]