PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B03516.1.p | ||||||||
Common Name | EUGRSUZ_B03516 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 96aa MW: 11088.1 Da PI: 10.5363 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 102.9 | 1.2e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Eucgr.B03516.1.p 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSHRGKLYEFCS 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.333 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-31 | 2 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.14E-40 | 2 | 61 | No hit | No description |
PRINTS | PR00404 | 2.2E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSH RGKLYEFCSS 60 SSTPIDGFFT DGVVTFRHKE RNLILLWFLF MLSFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-19 | 1 | 61 | 1 | 61 | MEF2C |
5f28_B | 1e-19 | 1 | 61 | 1 | 61 | MEF2C |
5f28_C | 1e-19 | 1 | 61 | 1 | 61 | MEF2C |
5f28_D | 1e-19 | 1 | 61 | 1 | 61 | MEF2C |
6byy_A | 2e-19 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_B | 2e-19 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_C | 2e-19 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_D | 2e-19 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_A | 2e-19 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_B | 2e-19 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_C | 2e-19 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_D | 2e-19 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B03516.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC108759 | 4e-58 | AC108759.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence. | |||
GenBank | AK072867 | 4e-58 | AK072867.1 Oryza sativa Japonica Group cDNA clone:J023143P16, full insert sequence. | |||
GenBank | AP014965 | 4e-58 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 4e-58 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. | |||
GenBank | FJ750936 | 4e-58 | FJ750936.1 Oryza sativa clone KCS108B10 MADS-box transcription factor 8 mRNA, complete cds. | |||
GenBank | OSU78892 | 4e-58 | U78892.1 Oryza sativa MADS box protein (OsMADS8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007158666.1 | 1e-36 | hypothetical protein PHAVU_002G1723001g, partial | ||||
Swissprot | Q8LLR0 | 1e-36 | MADS4_VITVI; Agamous-like MADS-box protein MADS4 | ||||
TrEMBL | A0A059D988 | 5e-63 | A0A059D988_EUCGR; Uncharacterized protein | ||||
STRING | XP_007158666.1 | 4e-36 | (Phaseolus vulgaris) | ||||
STRING | cassava4.1_033922m | 5e-37 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.3 | 6e-39 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B03516.1.p |
Publications ? help Back to Top | |||
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