PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B03324.1.p | ||||||||
Common Name | EUGRSUZ_B03324, LOC104433534 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 27433.7 Da PI: 7.1616 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.2e-16 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd ll+d ++ +G+g+W++I++ g++R +k+c++rw++yl Eucgr.B03324.1.p 12 KGLWTEEEDRLLLDHIRVHGPGRWNRIPKFTGLRRHGKSCRLRWLNYL 59 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 62.9 | 6.2e-20 | 65 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eEd+l+v+++k+lG++ W++Ia +++ gRt++q+k++w+++l Eucgr.B03324.1.p 65 RGKFSEEEDDLIVRLHKLLGNR-WSLIAGRVP-GRTDNQVKNHWNTHL 110 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.524 | 7 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.58E-30 | 11 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-13 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 12 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-22 | 13 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.77E-11 | 15 | 59 | No hit | No description |
PROSITE profile | PS51294 | 27.77 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-18 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-18 | 65 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.10E-13 | 67 | 110 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 67 | 114 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGAEAGESLH RKGLWTEEED RLLLDHIRVH GPGRWNRIPK FTGLRRHGKS CRLRWLNYLS 60 PAVKRGKFSE EEDDLIVRLH KLLGNRWSLI AGRVPGRTDN QVKNHWNTHL FKKLGTGNFK 120 RPRSDPKPEY RAQEEQETTD HHHPINDSNA GNCDRLPPCR STMSNTSADD AEVGDVLMRE 180 NFLTGSEGSD GEEWMRDHRV WLGSPMLSSD RYFELSNVGL EDLVIDSYSL DQMWRHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-29 | 12 | 114 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B03324.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010044624.1 | 1e-176 | PREDICTED: transcription factor WER | ||||
Swissprot | Q9SEI0 | 3e-57 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A059D8G8 | 1e-175 | A0A059D8G8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010044624.1 | 1e-175 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 1e-59 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B03324.1.p |
Entrez Gene | 104433534 |