PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B03208.1.p | ||||||||
Common Name | EUGRSUZ_B03208, LOC104433441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 29483.7 Da PI: 9.6704 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.6 | 4.8e-53 | 5 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+v+yL+++v ++++++ ++i+e+diyk++Pw+L +++k +ekewyfF+ r++ky +g r+nra+ sgyWkatg+dk+++ Eucgr.B03208.1.p 5 LPPGFRFHPTDEELIVYYLQNQVMSRPCPV-SIISELDIYKFDPWQLTENAKLGEKEWYFFTLRSRKYLNGARPNRAAVSGYWKATGSDKAIY 96 79****************************.89**************9888999*************************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++++vg+kk+Lvfykgr pkg ktdW+mheyrl Eucgr.B03208.1.p 97 S-GSKHVGVKKSLVFYKGRPPKGLKTDWIMHEYRL 130 *.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-62 | 3 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.153 | 5 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-26 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MNHELPPGFR FHPTDEELIV YYLQNQVMSR PCPVSIISEL DIYKFDPWQL TENAKLGEKE 60 WYFFTLRSRK YLNGARPNRA AVSGYWKATG SDKAIYSGSK HVGVKKSLVF YKGRPPKGLK 120 TDWIMHEYRL ADSRTNVQHR SMKLDWVLCR IYKKQRSSKS LDRKVEDFHG QSNRTMTNEA 180 SDKQVMRLPN FCSLTPDLLQ LDYFGPISQF LIGSSYHPTF DGQNIIVDGE AYGAEKKLQL 240 HGNKVSCLYA DQGKL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-62 | 5 | 159 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-62 | 5 | 159 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-62 | 5 | 159 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-62 | 5 | 159 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-61 | 5 | 159 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-61 | 5 | 159 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-61 | 5 | 159 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-61 | 5 | 159 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-61 | 5 | 159 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-61 | 5 | 159 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-61 | 5 | 159 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-61 | 5 | 159 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 9e-62 | 5 | 159 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 9e-62 | 5 | 159 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B03208.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010044485.1 | 0.0 | PREDICTED: NAC transcription factor 29 | ||||
Swissprot | K4BWV2 | 2e-95 | NAP1_SOLLC; NAC domain-containing protein 1 | ||||
TrEMBL | A0A059D770 | 0.0 | A0A059D770_EUCGR; Uncharacterized protein | ||||
STRING | XP_010044485.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7707 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-96 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B03208.1.p |
Entrez Gene | 104433441 |
Publications ? help Back to Top | |||
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