PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03189.1.p
Common NameEUGRSUZ_B03189, LOC104433420
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 530aa    MW: 57187.6 Da    PI: 7.2425
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03189.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.37.6e-34247303259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpv+kkvers  d++++ei+Y+g+Hnh+
  Eucgr.B03189.1.p 247 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPDCPVRKKVERSL-DGHITEIIYKGQHNHQ 303
                       8****************************************.***************8 PP
2WRKY107.47e-34418476159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Eucgr.B03189.1.p 418 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHD 476
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-30243305IPR003657WRKY domain
SuperFamilySSF1182903.14E-26245305IPR003657WRKY domain
SMARTSM007742.4E-37246304IPR003657WRKY domain
PfamPF031067.7E-26247303IPR003657WRKY domain
PROSITE profilePS5081123.789247305IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-37404478IPR003657WRKY domain
SuperFamilySSF1182909.55E-30410478IPR003657WRKY domain
PROSITE profilePS5081138.836413478IPR003657WRKY domain
SMARTSM007741.3E-39418477IPR003657WRKY domain
PfamPF031063.5E-26419476IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MATDEKPPQQ QPPPPPPSSA SASSAKPPAR PTITLPPRAS IDSFFSNGPA AASAGGLGLS  60
LGFSPGPMTL VSSFFSDSEE YKSFSQLLAG AMASPAAQRP PPAAGEPAPA PPDAAGEGEF  120
RFKQNRPEGL VISPPPPLSP LFAVPPGLSP TTLLDSPGFF SPGPFGMSHQ QALAQVTAQA  180
AQAQSYLQMH FEYSNSASAA PATSLAQPIF QQVPSLPDEK VAVTESSELS QSDLRAQPPL  240
QVDKPADDGY NWRKYGQKQV KGSEFPRSYY KCTHPDCPVR KKVERSLDGH ITEIIYKGQH  300
NHQRPLNKRA KDAGTAGGGD SHVQEHPQFM SHVQSGEPSN LMFKKEQESS QLTPEHLSGT  360
SDSEEVGNSE YGAEEGCEGE PEPKRRNTEI RVVESAASLK AVSEPKIIVQ TTSEVDLLDD  420
GYRWRKYGQK VVKGNPYPRS YYKCTTPGCN VRKHVERAST DPKAVITTYE GKHNHDVPAA  480
RTSSHSIANS NIPQVRPHQT QDNRRTSSGK TDFVNRPIAR LLLKEEQTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-44247479878Probable WRKY transcription factor 4
2lex_A7e-44247479878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03189.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044462.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-167WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A059D7550.0A0A059D755_EUCGR; Uncharacterized protein
STRINGXP_010044462.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-139WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]