PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03050.1.p
Common NameEUGRSUZ_B03050
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 164aa    MW: 18279.9 Da    PI: 10.721
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.32.3e-3121126199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+ t+sdv+k++r+v+pk++ae+h       +  + +++ l + d+ g++W+++++y+++s++yvlt+GW +Fvk++ L++gD+v F+++ 
  Eucgr.B03050.1.p  21 FQKEVTQSDVGKLNRFVIPKQHAEKHfplrnrtSPTTSKGVLLNFIDSGGKVWRFRYSYWNSSRSYVLTRGWTRFVKEKSLRTGDIVSFHRSA 113
                       99**************************99987555568999************************************************998 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                         e++l++k  r+
  Eucgr.B03050.1.p 114 GPEKQLHIKCMRR 126
                       8899899999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-3812127IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-3019127IPR015300DNA-binding pseudobarrel domain
CDDcd100175.15E-2620112No hitNo description
PfamPF023623.2E-2721126IPR003340B3 DNA binding domain
SMARTSM010193.2E-2321127IPR003340B3 DNA binding domain
PROSITE profilePS5086313.97221127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MEAIRDPSGP DRAAMACHLL FQKEVTQSDV GKLNRFVIPK QHAEKHFPLR NRTSPTTSKG  60
VLLNFIDSGG KVWRFRYSYW NSSRSYVLTR GWTRFVKEKS LRTGDIVSFH RSAGPEKQLH  120
IKCMRRSGLS QAGPIHPVQM VRLFGVDIFE VSAEDGGGYG GGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-491713410127DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046597.21e-118PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like
RefseqXP_018724575.11e-119PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822801e-55RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A059D8251e-118A0A059D825_EUCGR; Uncharacterized protein
STRINGXP_010046597.11e-117(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.24e-58related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]