PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03048.1.p
Common NameEUGRSUZ_B03048, LOC104433302
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family RAV
Protein Properties Length: 365aa    MW: 39809 Da    PI: 9.4502
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.34e-1365113155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa a++ a+++++g
  Eucgr.B03048.1.p  65 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAMAYDVAAQRFRG 113
                       89****9888.8*********3.....5**********99************998 PP
2B3101.35.4e-32197302199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+ tpsdv+k++rlv+pk++ae+h       ++ + +++ l +ed+ g++W+++++y+++s++yvlt+GW++Fvk++gL +gD+v F+ + 
  Eucgr.B03048.1.p 197 FEKAVTPSDVGKLNRLVIPKQHAEKHfplrngtSSATSKGVLLNFEDSGGKVWRFRYSYWNSSQSYVLTRGWSRFVKEKGLTAGDIVSFHQSA 289
                       89****************************99866777999*************************************************776 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                         e++l+++ +r+
  Eucgr.B03048.1.p 290 GPEKQLHIGYRRR 302
                       6899999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.21E-2565120No hitNo description
PfamPF008477.6E-965113IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-1765121IPR016177DNA-binding domain
SMARTSM003801.1E-2866127IPR001471AP2/ERF domain
PROSITE profilePS5103219.62566121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-2066122IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.8E-38194302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-30195300IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-27196301No hitNo description
SMARTSM010194.2E-25197303IPR003340B3 DNA binding domain
PROSITE profilePS5086314.579197303IPR003340B3 DNA binding domain
PfamPF023621.1E-28197302IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDGNSSCIDE LSSTSDSVCV PPPSKSSPPP LPPPPQSLCR HGSGTSVIVD SEGCVEAESR  60
KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA AMAYDVAAQR FRGGDAVTNF  120
KRKSEAEDYD LEAAFLSAHS KPEIVDMLRK HTYRDELEQS KRKCLNSNGG GKRASMTEVL  180
GDLSSPGGIA MVRQLLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLRNGTS SATSKGVLLN  240
FEDSGGKVWR FRYSYWNSSQ SYVLTRGWSR FVKEKGLTAG DIVSFHQSAG PEKQLHIGYR  300
RRSSLGGSGP VLPVQMVRLF GVNIFKVSAA GGGDDTGDWS GKRMREVELL SLGCNKKQMV  360
IGAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5319431011127DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03048.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044293.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1
SwissprotQ9C6M51e-143RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A059D7A50.0A0A059D7A5_EUCGR; Uncharacterized protein
STRINGXP_010044293.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-141RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]