PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B03016.1.p

Common Name

EUGRSUZ_B03016

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 263aa MW: 28818.7 Da PI: 8.7498

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B03016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	83.6	2.8e-26	4	110	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer....edamsslvyeAearardPvyGavgvilklq 84 +C++C+vlr++C++dC+++p++ p++q++++ +++k++G++ +++l++a p + r +++ sl+yeA+ r+ +P+yG+vg++++++ Eucgr.B03016.1.p 4 SCNGCRVLRKACSEDCTIRPCLqwiqsPESQANATTFLAKFYGRAGLINLINAGPSNLRpgikIHLLLSLLYEACGRIVNPIYGSVGLLWSGN 96 6***************************************************99998666578999********************* PP DUF260 85 qqleqlkaelallk 98 + +q++++++l++ Eucgr.B03016.1.p 97 WAQCQSAVDAVLQG 110 *****9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.424	3	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.9E-20	4	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MRMSCNGCRV LRKACSEDCT IRPCLQWIQS PESQANATTF LAKFYGRAGL INLINAGPSN 60 LRPGIKIHLL LSLLYEACGR IVNPIYGSVG LLWSGNWAQC QSAVDAVLQG SSQFLRSPSL 120 DSTGPRLKPC DIRHVRKTSG SGGLRKIRTG TQFKRSSSNR DKLGTEPEEL FGREGSKWIY 180 PGPIYEETSH DSRAAANRES AEAESIFSVE TVEASLANLG KRNRMLKFDW PAEESPESPL 240 QLELGLGVKP SSHPSEPDFG RH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B03016.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010044265.1	0.0	PREDICTED: LOB domain-containing protein 40
Swissprot	Q9M886	4e-65	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A059D7D3	0.0	A0A059D7D3_EUCGR; Uncharacterized protein
STRING	XP_010044265.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8463	26	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-66	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Eucgr.B03016.1.p