PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B02591.2.p | ||||||||
Common Name | EUGRSUZ_B02591 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C3H | ||||||||
Protein Properties | Length: 259aa MW: 27386.9 Da PI: 8.4973 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.6 | 1.2e-09 | 64 | 89 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+Gd+C+FaHg+ Eucgr.B02591.2.p 64 KTRLCNKFNTAEGCKFGDKCHFAHGE 89 8***********************96 PP | |||||||
2 | zf-CCCH | 37.1 | 5.2e-12 | 225 | 249 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C++G+rC+FaHg Eucgr.B02591.2.p 225 FKTKLCENFAK-GSCNFGERCHFAHG 249 69*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 7.413 | 1 | 25 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.7 | 12 | 22 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-14 | 59 | 94 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-8 | 60 | 93 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.629 | 62 | 90 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.2E-4 | 62 | 89 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.0E-7 | 64 | 89 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 7.74E-15 | 127 | 205 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.2E-10 | 132 | 202 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 13.837 | 133 | 197 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 2.2E-15 | 133 | 204 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 8.7E-10 | 135 | 199 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.04E-13 | 137 | 198 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-15 | 222 | 255 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.37E-9 | 223 | 254 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.981 | 224 | 251 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-7 | 224 | 250 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-9 | 225 | 249 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MIEFFTFSTS GCPFGEGCHF LHYVPGGFKA VSQMLNLGGN PTLPHASRNA APSYPEAPSP 60 TAVKTRLCNK FNTAEGCKFG DKCHFAHGEW ELGKPTGPSY DDPRGMVPPS GRYGGRNEPP 120 PPGLAAAASF GASATAKISI DASLAGPIIG RNGVNSKQIC RVTGAKLSIR EHDSDPNLRN 180 IELEGTFDQI KQASAMVHEL IANVASASRP AMKNSAAHSA PRSNFKTKLC ENFAKGSCNF 240 GERCHFAHGT EELNKPGL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B02591.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043856.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 4e-98 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A059D6M4 | 0.0 | A0A059D6M4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043856.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 8e-54 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B02591.2.p |