PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.B02485.1.p | ||||||||
Common Name | EUGRSUZ_B02485 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 280aa MW: 31733.9 Da PI: 9.1677 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.7 | 1.2e-49 | 12 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 ppGfrFhP+deel+ +yL++kv++ +l++ vi+++d+yk++Pw+Lp +k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l Eucgr.B02485.1.p 12 PPGFRFHPSDEELIIHYLQNKVTSLPLPA-PVIADIDLYKYNPWELPtEKALFGEDEWYFFSPRDRKYPNGGRPNRAAASGYWKATGTDKPIL 103 9***************************9.89***************656667999************************************* PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++ +g+kk Lvfy+gr k+ ktdW+m+eyrl Eucgr.B02485.1.p 104 ASgESRSIGVKKALVFYTGRPTKSAKTDWIMNEYRL 139 9877788***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.5E-60 | 7 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.486 | 11 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-27 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 280 aa Download sequence Send to blast |
MEKESSSTFQ FPPGFRFHPS DEELIIHYLQ NKVTSLPLPA PVIADIDLYK YNPWELPTEK 60 ALFGEDEWYF FSPRDRKYPN GGRPNRAAAS GYWKATGTDK PILASGESRS IGVKKALVFY 120 TGRPTKSAKT DWIMNEYRLL DTVIRPSRLK GSMRLDDWVL CRVRQKTKVP KKNVQNQDRQ 180 SPEAPRYSLQ TEAAQPTCTY FNPHMSMDHL FKDCQLIAYL LAGKAPPAME AISNISVEGS 240 RNGNNINSVY YESSDNIDSP STVYPTSNCV NTLKRKAFE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-66 | 2 | 172 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-66 | 2 | 172 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-66 | 2 | 172 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-66 | 2 | 172 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-66 | 2 | 172 | 11 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-66 | 2 | 172 | 11 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-66 | 2 | 172 | 11 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-66 | 2 | 172 | 11 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-66 | 2 | 172 | 11 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-66 | 2 | 172 | 11 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-66 | 2 | 172 | 11 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-66 | 2 | 172 | 11 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-66 | 2 | 172 | 8 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-66 | 2 | 172 | 8 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.B02485.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018724402.1 | 0.0 | PREDICTED: NAC domain-containing protein 18 | ||||
Swissprot | A2YMR0 | 1e-76 | NAC10_ORYSI; NAC transcription factor ONAC010 | ||||
TrEMBL | A0A059D550 | 0.0 | A0A059D550_EUCGR; Uncharacterized protein | ||||
STRING | XP_006488646.1 | 1e-119 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17984 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61110.1 | 8e-76 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.B02485.1.p |