PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B02465.1.p | ||||||||
Common Name | EUGRSUZ_B02465, LOC104432844 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 24044.4 Da PI: 4.9151 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.9 | 1.1e-40 | 53 | 153 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCa.kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+Ca ++Cvlapyfp ++p+kf ++h++FGasn++kll++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a Eucgr.B02465.1.p 53 PCAACKILRRRCAvEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKLLQDLPESQRADAVSSMVYEAGARIRDPVYGCAGAICQLQKQVSELQA 145 7***********8356***************************************************************************** PP DUF260 93 elallkee 100 +la++++e Eucgr.B02465.1.p 146 QLAKAQAE 153 ****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.773 | 52 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.5E-41 | 53 | 151 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MAVQDMEVSD ASVTNGNAHT SSTTTSSPQS VSPTSSSSPP PPLPPPTPVI ISPCAACKIL 60 RRRCAVEKCV LAPYFPPTEP AKFTIAHRVF GASNIIKLLQ DLPESQRADA VSSMVYEAGA 120 RIRDPVYGCA GAICQLQKQV SELQAQLAKA QAEILTMQHQ QTNLVALLCM EMAQSASQPP 180 AQQFVDNLID TSPTIYQNNS NNNISPFLDE TNVMGSMWEP LWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-42 | 45 | 155 | 3 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-42 | 45 | 155 | 3 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B02465.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043701.1 | 1e-164 | PREDICTED: LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 5e-71 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A059D513 | 1e-163 | A0A059D513_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043701.1 | 1e-163 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-60 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B02465.1.p |
Entrez Gene | 104432844 |