PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B02401.1.p | ||||||||
Common Name | EUGRSUZ_B02401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 242aa MW: 27345.5 Da PI: 7.404 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.2e-17 | 49 | 94 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ Eucgr.B02401.1.p 49 RGKMTPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 94 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.146 | 17 | 43 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 8.77E-22 | 29 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.8E-10 | 29 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.823 | 44 | 98 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-17 | 48 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-16 | 49 | 93 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.56E-12 | 51 | 94 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 56 | 95 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDRPRRFPTG VLCWTFWRSP MGFYSEGLNR TGKSCRLRWV NYLHPGLKRG KMTPQEERLV 60 LELHSKWGNR WSRIARKLPG RTDNEIKNYW RTHMRKEAQE KKHALSSSSA SSNISSSSSN 120 NPTVDSLTTR ETGKESFYGT GGPGDMLTST EKNIEEQGKS ESACSFDDIW KEIALADGYG 180 ILPIYDGYSE ESCNFSCPPM ASPTMEYNSD PLWLTDEEES KMFPVNQFIS NYGNGGAYIT 240 G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-18 | 30 | 98 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-17 | 30 | 98 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-17 | 30 | 98 | 37 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B02401.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043594.1 | 1e-158 | PREDICTED: transcription factor MYB59 | ||||
Swissprot | Q9LX82 | 2e-64 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A059D554 | 1e-180 | A0A059D554_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043594.1 | 1e-158 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2502 | 27 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.3 | 2e-66 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B02401.1.p |
Publications ? help Back to Top | |||
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