PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B02397.1.p | ||||||||
Common Name | EUGRSUZ_B02397, ZFP4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 162aa MW: 17484.6 Da PI: 10.399 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00034 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++Cg F+ L H+r+H Eucgr.B02397.1.p 79 HKCSICGLEFPLGQALGGHMRRH 101 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.35E-8 | 28 | 101 | No hit | No description |
PROSITE profile | PS50157 | 10.097 | 30 | 57 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.7E-11 | 30 | 54 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.47 | 30 | 52 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.2E-10 | 79 | 103 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.075 | 79 | 101 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.746 | 79 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MVKRDREDTE VEALAVANSL MLLSRVERIF ACKTCNREFS SFQALGGHRA SHKKPKLISG 60 DLLHLGHSVD SSLDKPKMHK CSICGLEFPL GQALGGHMRR HRAAILKRLA AAAAAAKPVP 120 VLKKSNSKIV TGLDLNSSPM EDDLTLRLGK FAPPLALDLV L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B02397.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC480192 | 0.0 | KC480192.1 Eucalyptus grandis C2H2-type zinc finger protein 4 (ZFP4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018720944.1 | 1e-92 | PREDICTED: zinc finger protein ZAT8 | ||||
TrEMBL | M9Z7K0 | 1e-111 | M9Z7K0_EUCGR; C2H2-type zinc finger protein 4 | ||||
STRING | XP_010043588.1 | 4e-92 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 6e-37 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B02397.1.p |