PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02350.1.p
Common NameEUGRSUZ_B02350
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 771aa    MW: 87006.7 Da    PI: 6.7462
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3795.8e-1163977681374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL +cA+av+ +d ++a+++L+++++++sp gd  qRla+ f+eAL+ar+  ++ ++y  l ++++s    +e l+a++++  v+P+ +f
  Eucgr.B02350.1.p 397 LRNLLCSCAQAVAVEDRKNANQYLKQIRQHSSPFGDGSQRLAHSFAEALKARMDCTGAQVYTELGSKRKS---ATEMLKAYRAYLSVFPFQRF 486
                       6899*********************************************************999888887...89****************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       + +  N++Il   e+++++HiiDf+i +G+QWpaL++ La Rp+gpp+lRiTg++ p+sg   +e+++etg+rLak++e+++vpfe+n+ +a+
  Eucgr.B02350.1.p 487 AIIYSNHMILSISEKATKLHIIDFGILYGFQWPALIHCLARRPGGPPKLRITGIELPQSGfrPAERVQETGRRLAKYCERFKVPFEYNA-IAQ 578
                       ***********************************************************9*****************************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       ++e++++e+L+++++E++aVn+ ++ ++llde+v ++s+rd+vLklv +++P+++v++  + + n+  F+ rf e l +ysalfd+++aklpr
  Eucgr.B02350.1.p 579 KWETIRIEDLKISKDEVVAVNCLFRFKNLLDETVIINSPRDQVLKLVHRIRPRIFVHSILNGSFNACFFVSRFREVLFHYSALFDAFDAKLPR 671
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       e+  r + Ere+++re+ nv+aceg+er+er et+++W+ r ++aGFkp+pl+  ++k+ k+ l++ + d + v+++ +++++gWk+r L++ 
  Eucgr.B02350.1.p 672 EHPMRLVFEREFFSREALNVIACEGTERVERPETYKQWQIRNTRAGFKPLPLDPVIMKKLKSKLKEGYLDDFVVDKDGQWMLQGWKGRILYAS 764
                       ********************************************************************888********************** PP

              GRAS 371 SaWr 374
                       S+W+
  Eucgr.B02350.1.p 765 SCWE 768
                       ***5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.234371748IPR005202Transcription factor GRAS
PfamPF035142.0E-113397768IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MFMDPQYAGY SGPFSGFNFH DQTLAPFSNP YEELANHLLL DDPESDLSVH FPSFASDPEP  60
CNSAVSPSFS VDGDFLSDYG DTSDPTLKYI NQMLMEEDID DKPCMFHDPL ALQAAEKSLY  120
DALCPKDRPS QNQSPLYMDS PDDNCSGSSN GYCGSSTITS STASGGNSVD FPGTGDYCES  180
RPSIFQPHIP ENFVFQATAI PSRQSGHEFR KNVITKAKGM LGSGSAMGEF MLPNLFADSN  240
SMLFFQKGFE EASRFIPKGN PLSIDTEKRM PHLVSKRETA RAAVKAENSE PELSYLYEIK  300
GNKKHEREDA EFEYQRSTKQ PAVCVEENEL ADIFDRVLLC APTGNKPDSK SPGSRFEDAS  360
NNGASQNVQK NLQSPALSAE QLCVKKPMSD KKEVVDLRNL LCSCAQAVAV EDRKNANQYL  420
KQIRQHSSPF GDGSQRLAHS FAEALKARMD CTGAQVYTEL GSKRKSATEM LKAYRAYLSV  480
FPFQRFAIIY SNHMILSISE KATKLHIIDF GILYGFQWPA LIHCLARRPG GPPKLRITGI  540
ELPQSGFRPA ERVQETGRRL AKYCERFKVP FEYNAIAQKW ETIRIEDLKI SKDEVVAVNC  600
LFRFKNLLDE TVIINSPRDQ VLKLVHRIRP RIFVHSILNG SFNACFFVSR FREVLFHYSA  660
LFDAFDAKLP REHPMRLVFE REFFSREALN VIACEGTERV ERPETYKQWQ IRNTRAGFKP  720
LPLDPVIMKK LKSKLKEGYL DDFVVDKDGQ WMLQGWKGRI LYASSCWEPV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5340476926380Protein SCARECROW
5b3h_A2e-5340476925379Protein SCARECROW
5b3h_D2e-5340476925379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02350.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724302.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A059D5R70.0A0A059D5R7_EUCGR; Uncharacterized protein
STRINGXP_010046395.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]