PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02348.1.p
Common NameEUGRSUZ_B02348
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 784aa    MW: 87417.6 Da    PI: 4.9672
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02348.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3511.9e-1074077802373
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        +lL+ cA+a+s++d++ a++lL++++e++sp+gd  qRla+yf+++L+arl+++ +++ + +++  +++++ ++ l+a++l   ++P+lk+s
  Eucgr.B02348.1.p 407 STLLILCAQAISTSDFRTANELLKQIRENSSPSGDGSQRLAHYFANGLEARLLGNEPRTQHFISSLVARRTSAADLLKAYHLNISTCPFLKLS 499
                       579************************************************************999999999********************* PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                          aN +Il+ +e+++++HiiDf+   G+QWp L+q L+sR+egp +lRiTg++ p++g   +e+leetg+ L+kf+e+++vpfefn +++k+
  Eucgr.B02348.1.p 500 ICFANYMILRIAEKATTLHIIDFGFAFGFQWPILIQRLSSRSEGPCKLRITGIELPQAGfrPSEKLEETGRHLEKFCERFNVPFEFNCIASKN 592
                       **********************************************************9******************************99** PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       +e+++le+L+++++E++aV++  +  +llde+v  + +rd+vL+l+++++P+++v++ +  ++ns+ F++rf  al   sa++d+++a l  +
  Eucgr.B02348.1.p 593 WESIKLEDLKIQSNETVAVSSLDRFRNLLDETVGDNCPRDAVLNLIQQMKPDIFVHTVRSGSYNSPFFATRFRAALFDLSAFYDMFDAILDGD 685
                       ********************************************************************************************* PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       s+er + Erel g+ei+nv+aceg+er+er et+++Wr r ++aGFk++pl+++ +k  ++ +++++ + + ++e+ +++++gW++r  +  S
  Eucgr.B02348.1.p 686 SKERFVFERELYGQEIMNVIACEGSERVERPETYKQWRVRHMRAGFKALPLDQELMKLFRSKMKTCYHKDFALDEDGNWMLQGWRGRINYCSS 778
                       *******************************************************************889*********************** PP

              GRAS 372 aW 373
                       +W
  Eucgr.B02348.1.p 779 CW 780
                       ** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.919380761IPR005202Transcription factor GRAS
PfamPF035146.5E-105407780IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MDPSFFDSSA SINGDDRPMD SRAFSTSPDR YLGLADGFFL DDPFLDLKSS DSAFLLNEVD  60
PANDLPSKSV DLGIGDLMFP STSRISDGGP FGPSMSSNSA LSLGGASLSP SGDTDSSDPV  120
LKYISQMLME ENMEEQPWEF ANQVALQNAE KSLYDALGQH SEVSDQSPSQ RVLSHNIESP  180
NSNLSGISSA RGSHDATSIT VGSSDSADAK ILYTIEEHGH AAQENSDLDF RSNVDSSSRL  240
LSNSSSSITN YDDGSEESLH ELLFKKGLEE ASKFLPTSNQ LGINPGDSKP PSETEKGTPR  300
MRISEEINMR RSTDGFKGLK NHERDKDAFD EGRANKQTAL YTEESEFSDL FDKVLLCNEN  360
GEAMCSGDKS VETGLSKDIR PQRKKRGSNR GRGRGKKQGS EYTVDLSTLL ILCAQAISTS  420
DFRTANELLK QIRENSSPSG DGSQRLAHYF ANGLEARLLG NEPRTQHFIS SLVARRTSAA  480
DLLKAYHLNI STCPFLKLSI CFANYMILRI AEKATTLHII DFGFAFGFQW PILIQRLSSR  540
SEGPCKLRIT GIELPQAGFR PSEKLEETGR HLEKFCERFN VPFEFNCIAS KNWESIKLED  600
LKIQSNETVA VSSLDRFRNL LDETVGDNCP RDAVLNLIQQ MKPDIFVHTV RSGSYNSPFF  660
ATRFRAALFD LSAFYDMFDA ILDGDSKERF VFERELYGQE IMNVIACEGS ERVERPETYK  720
QWRVRHMRAG FKALPLDQEL MKLFRSKMKT CYHKDFALDE DGNWMLQGWR GRINYCSSCW  780
VPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4041378226380Protein SCARECROW
5b3h_A1e-4041378225379Protein SCARECROW
5b3h_D1e-4041378225379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02348.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043539.10.0PREDICTED: scarecrow-like protein 34
TrEMBLA0A059D4840.0A0A059D484_EUCGR; Uncharacterized protein
STRINGXP_010043539.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14