PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02345.1.p
Common NameEUGRSUZ_B02345
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 768aa    MW: 86480.8 Da    PI: 4.7623
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02345.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3603.3e-1103907641373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL+ cA+a+s++d++ a++lL++++e +sp+gd  qRla+yf+++L+arl++s s++ +  ++  +++++ +++l++l+l   ++P+ k+
  Eucgr.B02345.1.p 390 LRTLLILCAQAISTSDFRTANELLKQIREYSSPSGDGSQRLAHYFANGLEARLVGSNSRTQDFYSTVVARRTSAADVLKVLHLHISTCPFKKL 482
                       5789****************************************************99999999999999999******************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       s + aN +Il+ +e+++++H+iDf+i  G+QWp L+q+L+sR+eg  +lRiTg++ p++g   +e++eetg+rL+k++e++ vpfefn+++++
  Eucgr.B02345.1.p 483 SIFFANYMILKIAEKATTLHVIDFGIRFGFQWPVLIQKLSSRSEGRCKLRITGIELPQAGlrPAERIEETGRRLKKYCERFSVPFEFNFIASR 575
                       ***********************************************************9*****************************9999 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       ++e+++l +L+++++E++aVn+  + ++l+de+v+ +++rd+vL+l+++++P+++v++ ++ ++n++ F++rf e l + sa++d+++a+l +
  Eucgr.B02345.1.p 576 NWESIKLADLKIRSNETVAVNSLDRFQNLFDETVEDNNPRDAVLNLIREIKPDIFVHAISNGSYNAPFFVTRFREVLFHLSAIYDMFDATLDA 668
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       + ee  + Erel grei+nv+aceg er+er et++ W+ r+++aGFk++pl+++ +k  + ++++ + + + ++e+ +++++gW++r ++  
  Eucgr.B02345.1.p 669 DCEESLVFERELYGREIMNVIACEGLERVERPETYKPWQVRIMRAGFKALPLDQELMKLFRGMMKESYHKDFALDEDGNWMLQGWRGRIIYGS 761
                       ********************************************************************888********************** PP

              GRAS 371 SaW 373
                       S+W
  Eucgr.B02345.1.p 762 SCW 764
                       *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.276364745IPR005202Transcription factor GRAS
PfamPF035141.2E-107390764IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MTMDPLNFDC SDCINVEDLP IDSRAFSPNP DQYPSLLDGF FWHDPFLDLK SSDSAFLSNK  60
VDPANDLPSK SVDLDIGDLI FPMTSMSSGG GPFGPSMISS SGLSPRAYSL SPSEDTDSWD  120
PVLKYVSQML MEENMEEQPW EFADQVALQN AEKSLYDALG QQHSEVSDQS PSQLDLSHYI  180
ESPTSSVSGS SSARGNHDAT SVTVSSCDSA DANILYTIEE HSQAVQENSD LDFQSNVDSS  240
SQLLSNSSSS ITNSDDWSEE SLHEFLVKSI FSDSESMIQF KKGLEEASKF LPTNSQLGIN  300
PEDSKLPLER KKATPRTCIN KEINMRRSSD GSKGLKNHER DEDAFEEGRA NKQTALYTED  360
SELSDLFDKR GSNRGRGRGK KQGSKNIVDL RTLLILCAQA ISTSDFRTAN ELLKQIREYS  420
SPSGDGSQRL AHYFANGLEA RLVGSNSRTQ DFYSTVVARR TSAADVLKVL HLHISTCPFK  480
KLSIFFANYM ILKIAEKATT LHVIDFGIRF GFQWPVLIQK LSSRSEGRCK LRITGIELPQ  540
AGLRPAERIE ETGRRLKKYC ERFSVPFEFN FIASRNWESI KLADLKIRSN ETVAVNSLDR  600
FQNLFDETVE DNNPRDAVLN LIREIKPDIF VHAISNGSYN APFFVTRFRE VLFHLSAIYD  660
MFDATLDADC EESLVFEREL YGREIMNVIA CEGLERVERP ETYKPWQVRI MRAGFKALPL  720
DQELMKLFRG MMKESYHKDF ALDEDGNWML QGWRGRIIYG SSCWVPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-4239776626380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02345.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018719698.10.0PREDICTED: scarecrow-like protein 34
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A059D5R30.0A0A059D5R3_EUCGR; Uncharacterized protein
STRINGXP_010043539.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]