PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B02344.1.p | ||||||||
Common Name | EUGRSUZ_B02344 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 661aa MW: 74859.2 Da PI: 6.2839 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 362.7 | 5.4e-111 | 282 | 657 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilk 92 l+ lL+ cA+a+s++d++ a++lL++++e +sp gd qRla+yf ++L+arl+++ ++ + ++s ++++ ++ l++++l ++P+ + Eucgr.B02344.1.p 282 LRALLILCAQAISTSDFRSANELLKQIREDSSPFGDGSQRLAHYFGNGLEARLVGNNIRMKDFYSTSILARTTsAADFLKYYHLNISTCPFAQ 374 5789***************************************************88888888866655555449999*************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 fs + aN +Il+ +e+++++HiiDf+i G+QWp+L+q+L+sRpegp +lRiTg++ p++g +e++eetg rL+k++e+++v fefn++++ Eucgr.B02344.1.p 375 FSTFFANYMILKFAEKATTLHIIDFGIAFGFQWPNLIQKLSSRPEGPCKLRITGIELPQAGfhPAERIEETGCRLKKYCERFDVAFEFNFIAS 467 ***********************************************************9999***************************999 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 +++e +++ +L+++++E++aVn+ ++ ++llde+ + +++rd+vL+l+++++P+++v++ + +++n++ F++rf eal + s ++d l+a+l Eucgr.B02344.1.p 468 RDWELIKVADLKIQSNETVAVNCLVRFKHLLDETIEDNNPRDAVLNLIRQIKPDIFVHAVRSVSYNAAFFVTRFREALFHLSDVYDLLDATLD 560 9******************************************************************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 +++er ++Ere+ grei+nv+aceg+er+er et+++W+ r ++aGFk++pl+++ +k ++ ++ + + + ++e+ +++++gW++r + Eucgr.B02344.1.p 561 CDNRERLVIEREFHGREIMNVIACEGSERIERPETYKQWQVRHMRAGFKALPLDQDFMKLFRAKMKAWYHKDFVLDEDGNWMLQGWRGRIFYG 653 *********************************************************************888********************* PP GRAS 370 vSaW 373 S+W Eucgr.B02344.1.p 654 SSCW 657 **** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.576 | 256 | 638 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-108 | 282 | 657 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 661 aa Download sequence Send to blast |
MEAHLVALQN TEKSLYDALG QQNLKQSDKS ASQVELSQYI ESPASNLSGS SSAHRSHDAT 60 NVTLSSSDLA DADIPYTIGE HSHAMLKNPD QNFLWNVDSN SQFLANSSSS ITNYDDGSEE 120 SLHGLLVKSF FSAGESMIQF KKGLEEASKF LLTNNQLAID PEDSKLSSET KKGTTRTGIE 180 EEINMKSSSN GFKGLQNHER DEDAFEEGRA NKQTALYTEE SELSDLFDKV LLSTENGPSM 240 CFDDKSVETG VTKDIRPPRS KRGSNRGRGR GKKQKSKNTV DLRALLILCA QAISTSDFRS 300 ANELLKQIRE DSSPFGDGSQ RLAHYFGNGL EARLVGNNIR MKDFYSTSIL ARTTSAADFL 360 KYYHLNISTC PFAQFSTFFA NYMILKFAEK ATTLHIIDFG IAFGFQWPNL IQKLSSRPEG 420 PCKLRITGIE LPQAGFHPAE RIEETGCRLK KYCERFDVAF EFNFIASRDW ELIKVADLKI 480 QSNETVAVNC LVRFKHLLDE TIEDNNPRDA VLNLIRQIKP DIFVHAVRSV SYNAAFFVTR 540 FREALFHLSD VYDLLDATLD CDNRERLVIE REFHGREIMN VIACEGSERI ERPETYKQWQ 600 VRHMRAGFKA LPLDQDFMKL FRAKMKAWYH KDFVLDEDGN WMLQGWRGRI FYGSSCWVPT 660 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-46 | 286 | 613 | 8 | 328 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B02344.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043534.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_010043535.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_010043536.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_018724296.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_018724297.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
TrEMBL | A0A059D4Y9 | 0.0 | A0A059D4Y9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043534.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B02344.1.p |