PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B02343.1.p | ||||||||
Common Name | EUGRSUZ_B02343 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 660aa MW: 74573.9 Da PI: 6.4093 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 355.2 | 9.7e-109 | 282 | 656 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l+ lL+ cA+a+s++d++ a++lL++++e +sp gd qRla+yf ++L+arl++++ ++ + +++ +++ + ++ l++++l ++P+++f Eucgr.B02343.1.p 282 LRALLILCAQAISTSDFRSANELLKQIREDSSPFGDGSQRLAHYFGNGLEARLVGNSIRTNDFFSTILARTISAADFLKYYHLNISTCPFVQF 374 5789***************************************************99999****999999999******************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 s + aN +Il+ +e+++++HiiDf+i G+QWp+L+q+L+sRpegp +lRiTg++ p++g +e++eetg rL+k++e+++v fefn+++++ Eucgr.B02343.1.p 375 STFFANYMILKFAEKATTLHIIDFGIAFGFQWPNLIQKLSSRPEGPCKLRITGIELPQAGfrPAERVEETGCRLKKYCERFDVAFEFNFIASR 467 ***********************************************************9*****************************9999 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e +++ +L+++++E++aVn+ ++ ++llde+v+ +++rd+vL+l+++++P+++v++ + ++++++ F++rf eal + s +d l+a++ Eucgr.B02343.1.p 468 NWELIKVADLKIQSNETVAVNCLVRFKNLLDETVEDNNPRDAVLNLIRQIKPDIFVHAVRSVSYTAAFFVTRFREALFHLSDAYDLLDATVDC 560 ********************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 ++ er ++Ere+ grei+nv+aceg+ r er et+++W+ r +aGFk++pl+++ +k + ++ + + + ++e+ +++++gW++r + Eucgr.B02343.1.p 561 DDTERLVIEREFYGREIMNVIACEGSGRMERPETYKQWQVRHLRAGFKALPLDQDFMKLFRGKMKAWYHKDFVLDEDGNWMLQGWRGRIFYGS 653 ********************************************************************888********************** PP GRAS 371 SaW 373 S+W Eucgr.B02343.1.p 654 SCW 656 *** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.486 | 256 | 637 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.3E-106 | 282 | 656 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 660 aa Download sequence Send to blast |
MEAHLVALQN TEKSLYDALG QQNLEQSDKS PSQVELSQYI ESPASNLSGS SSAHRSRDAT 60 NVTLSSSDLA DADILYTIGE HSHAVLKNPD QNFLWNVDSN LQFLANSSSS ITNYDDGSEE 120 SLHGLLLKSI LSTGESTIQF KNGLEEASKF LLTNNQLAIN PEDSKPSSET KKGTPRTPIE 180 EEIHMKSSSN GFKGLKNHER EEDAFQEGRA NKQTALYTEE SELSDLFDKV LLSTENGPSM 240 CSGDKSVETR VTKDIRPPRN KRGSNRGRGR GKKQKSKNTV DLRALLILCA QAISTSDFRS 300 ANELLKQIRE DSSPFGDGSQ RLAHYFGNGL EARLVGNSIR TNDFFSTILA RTISAADFLK 360 YYHLNISTCP FVQFSTFFAN YMILKFAEKA TTLHIIDFGI AFGFQWPNLI QKLSSRPEGP 420 CKLRITGIEL PQAGFRPAER VEETGCRLKK YCERFDVAFE FNFIASRNWE LIKVADLKIQ 480 SNETVAVNCL VRFKNLLDET VEDNNPRDAV LNLIRQIKPD IFVHAVRSVS YTAAFFVTRF 540 REALFHLSDA YDLLDATVDC DDTERLVIER EFYGREIMNV IACEGSGRME RPETYKQWQV 600 RHLRAGFKAL PLDQDFMKLF RGKMKAWYHK DFVLDEDGNW MLQGWRGRIF YGSSCWVPT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-43 | 286 | 612 | 8 | 328 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B02343.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043533.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_018724298.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
TrEMBL | A0A059D480 | 0.0 | A0A059D480_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043533.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B02343.1.p |