PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02342.1.p
Common NameEUGRSUZ_B02342
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 551aa    MW: 62422.5 Da    PI: 4.7806
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02342.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS82.47.7e-2629440311120
              GRAS  11 avssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
                        +s++d++ a++lL++++e +sp gd  qRla+yf ++L+arl+++  ++ + +++  ++++++++ l++++l   ++P+++fs + aN +Il
  Eucgr.B02342.1.p 294 TISTSDFRSANELLKQIREDSSPFGDGSQRLAHYFGNGLEARLVGNNIRMNDFFSTIVARTTSTADYLKYYHLNISTCPFVQFSMFFANYMIL 386
                       5899*****************************************999999999999999999****************************** PP

              GRAS 104 eavegeervHiiDfdis 120
                       + +e+++++HiiDf+i 
  Eucgr.B02342.1.p 387 KFAEKATTLHIIDFGIA 403
                       ***************95 PP
2GRAS44.72.2e-14405471156222
              GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles 222
                       e++eetg rL+k++e+++v fefn++ ++++e +++ +L+++++E++aVn+  + ++llde+v+ ++
  Eucgr.B02342.1.p 405 ERIEETGCRLKKYCERFDVAFEFNFISSRDWELIKVADLKIQSNETVAVNCLNRFKNLLDETVEDNN 471
                       6799*********************9999********************************998776 PP
3GRAS43.26.5e-14474547300373
              GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       ceg+er++r et+++W+ r  +aGFk++pl+++ +k  +  ++  + + + ++e+ +++++gW++r  +  S+W
  Eucgr.B02342.1.p 474 CEGSERIQRFETYKQWQVRHVRAGFKSLPLDQDFMKLFRGKMKAWYHKDFVLDEDGNWMLQGWRGRIFYGSSCW 547
                       9*********************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.206258550IPR005202Transcription factor GRAS
PfamPF035142.7E-23294403IPR005202Transcription factor GRAS
PfamPF035147.7E-12405471IPR005202Transcription factor GRAS
PfamPF035142.2E-11474547IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MSLDGGSFGP SRSLSKGQSP ERDSLSPSRD SDSLDPVLKY INQMLMEENM EEQPSVFAGQ  60
VALQNTEKSL YDALGQQNLE QSDKSPSQVE LSQYIESPAS NLSGSSSAHR SRDATNVTLS  120
SSDLADADIL YTIGEHSHAV LKNPDQNFLW NVDSNLQFLA NSSSSITNYD DGSEESLHGL  180
LVKRIFSTGE SMIQFKKGLE EASKFLLTNN QLAINPEDSK PSSETKKGTT RTRIEEEIDM  240
RSSSNGFKGL KNHEREEDAF EEGRANKQTA LYTEESELSD LLDKVLLSTE NCPTISTSDF  300
RSANELLKQI REDSSPFGDG SQRLAHYFGN GLEARLVGNN IRMNDFFSTI VARTTSTADY  360
LKYYHLNIST CPFVQFSMFF ANYMILKFAE KATTLHIIDF GIAFERIEET GCRLKKYCER  420
FDVAFEFNFI SSRDWELIKV ADLKIQSNET VAVNCLNRFK NLLDETVEDN NPPCEGSERI  480
QRFETYKQWQ VRHVRAGFKS LPLDQDFMKL FRGKMKAWYH KDFVLDEDGN WMLQGWRGRI  540
FYGSSCWVPT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02342.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043534.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_010043535.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_010043536.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724296.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724297.10.0PREDICTED: scarecrow-like protein 34
TrEMBLA0A059D4N60.0A0A059D4N6_EUCGR; Uncharacterized protein
STRINGXP_010043534.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.12e-67SCARECROW-like 14