PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B02340.1.p | ||||||||
Common Name | EUGRSUZ_B02340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 475aa MW: 54227.6 Da PI: 8.606 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 350.9 | 2e-107 | 98 | 471 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPi 90 l++lL+ cA+a+s++d++ a++lL++++e++sp gd+ qRla+yf+++L+arl++ ++ y+++ +++ts ++ l++++l ++P+ Eucgr.B02340.1.p 98 LRTLLILCAQAISNNDFRTANELLKQIRENSSPFGDASQRLAHYFANGLEARLMGnnvRGEVFYSTVVARRTS---AADILKSYHLHISTCPF 187 5789*************************************************99433344566666666666...9**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 +fs + aN +Il+ +e+++++HiiDf+i G+QWp+L+q+L+sRp+gp +lRiTg++ p++g e++eetg+rL+k++e+++vpfefn++ Eucgr.B02340.1.p 188 NQFSMFFANYMILKFAEKATTLHIIDFGIAFGFQWPNLIQKLSSRPGGPCKLRITGIELPQAGlrPVERIEETGRRLKKYCERFDVPFEFNFI 280 **************************************************************9*9***************************9 PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 +++++e ++l +L+++++E++aVn+ + ++l d++v+ +++rd+vL l++++ P+++v++ + ++n++ F +rf eal +sa++d l+a+ Eucgr.B02340.1.p 281 ASRNWEFIKLADLKIQSNETVAVNCLDRFKNL-DDTVEDNNPRDAVLYLIRKIIPDIFVHAVRSGSYNAAFFETRFREALFEFSAVYDLLDAT 372 999**********************9988777.7*********************************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 + ++++er ++Ere+ grei+nv+aceg++r+e+ et+++W+ r +aGFk++pl+++ +k + ++ + + + ++e+ ++++++W++r Eucgr.B02340.1.p 373 IDHNNKERLVIEREFHGREIMNVIACEGSRRIEKPETYKQWQVRHVRAGFKALPLDQDFMKLFRGKMKAWYHKDFVLDEDGNWMLQCWRGRIS 465 ***********************************************************************888******************* PP GRAS 368 vsvSaW 373 + S+W Eucgr.B02340.1.p 466 FGSSCW 471 ****** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.764 | 72 | 452 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.8E-105 | 98 | 471 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MKSSSNGFKG LKNHERDENA FEEGRANKQT ALYTEESELS DLFDKVLLGT ENGVGMSSGN 60 EAAETGVRKD IQPQRNKHGS NSGSGCGKKQ GSKNTVDLRT LLILCAQAIS NNDFRTANEL 120 LKQIRENSSP FGDASQRLAH YFANGLEARL MGNNVRGEVF YSTVVARRTS AADILKSYHL 180 HISTCPFNQF SMFFANYMIL KFAEKATTLH IIDFGIAFGF QWPNLIQKLS SRPGGPCKLR 240 ITGIELPQAG LRPVERIEET GRRLKKYCER FDVPFEFNFI ASRNWEFIKL ADLKIQSNET 300 VAVNCLDRFK NLDDTVEDNN PRDAVLYLIR KIIPDIFVHA VRSGSYNAAF FETRFREALF 360 EFSAVYDLLD ATIDHNNKER LVIEREFHGR EIMNVIACEG SRRIEKPETY KQWQVRHVRA 420 GFKALPLDQD FMKLFRGKMK AWYHKDFVLD EDGNWMLQCW RGRISFGSSC WVPT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-49 | 105 | 473 | 26 | 380 | Protein SCARECROW |
5b3h_A | 5e-49 | 105 | 473 | 25 | 379 | Protein SCARECROW |
5b3h_D | 5e-49 | 105 | 473 | 25 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B02340.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018724295.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 34 | ||||
Swissprot | Q9XE58 | 1e-177 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A059D5Q9 | 0.0 | A0A059D5Q9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043534.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-175 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B02340.1.p |
Publications ? help Back to Top | |||
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