PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B02337.1.p | ||||||||
Common Name | EUGRSUZ_B02337, LOC104432717 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 790aa MW: 87863.6 Da PI: 4.7203 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 376.3 | 3.9e-115 | 412 | 786 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL+ cA+avs++d++ a +lL+++++ +s +gd qRla+yf+++L+arla+s + +se ++++++++l+a++l ++P+ k+ Eucgr.B02337.1.p 412 LRSLLILCAQAVSANDFRTAYELLKQIRQDSSASGDGSQRLAHYFANGLEARLAGSAGDRQTFFYSSELQKRTVADKLKAYQLHLSACPFKKL 504 6899***************************************************999999999******9********************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 l aN +l+ +++++ +HiiDf+is G+QWp L+q+L++R++gpp+lRiTg++ p+sg +e++eetg+rLak++e+++vpfef+++ ++ Eucgr.B02337.1.p 505 PILFANVVLLKIAATAKVLHIIDFGISFGFQWPILIQELSKRDGGPPELRITGIEIPQSGfrPAERIEETGRRLAKYCERFKVPFEFHAIPSR 597 ***********************************************************9*****************************9999 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e++++e+L++++gE +aVn+ + ++l+de+v+++ +rd+vL+l++s++P+v+v+ ++ ++n++ Fl+rf eal + sa++d+l+a++p+ Eucgr.B02337.1.p 598 NWECIRVEDLKIQSGEIVAVNCLSRFKNLYDETVEVDCPRDAVLRLIRSIKPDVFVHGISNGSYNAPFFLTRFREALFHLSAIYDMLDATVPS 690 ********************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 ++++r++vEre+ grei+nvvaceg er+er et+++W+ r+ +aGF+++pl++++++ a++ +++++ + + + ees++++lgW++r + ++ Eucgr.B02337.1.p 691 DNDQRVVVEREFYGREIMNVVACEGLERIERPETYKQWQVRVARAGFTQLPLDQEVMEMARTKMSRHYPKDFVLAEESKWMLLGWRGRIISAC 783 ********************************************************************777********************** PP GRAS 371 SaW 373 ++W Eucgr.B02337.1.p 784 TCW 786 *** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.701 | 386 | 767 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-112 | 412 | 786 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 790 aa Download sequence Send to blast |
MESNFTGSTH AADDFETNSL AHPANSDHPS NLLDGFDINN FYVDFNSTEI TSLLYQTEPA 60 YDNPSAAVNL DGDFDFPSTD VSSKDASLQH STISNGSPSQ GGESFSPPSD YSNSTDPVLR 120 YIHQMLEEEN VEEQPWISPD DFALQDTEKS LYDLLGENST FSPEPAVQFD INQFIDSPSS 180 NSYENSSDQG GDGTTDTRTN CSQFSGPNSP DNPEGKNQAV LQGPYPGNGV LPSNMGTSSQ 240 LHTNPMSSLQ HQDEFSDSFP SDLLVSNMFS NSNSILQFNK GLEEARKFLP SSIQLTINQE 300 DYKSAPNVRE PGENGTDDGK SVKSRSESGS WGRKNHERDD ESFEEGRANK QSASYTEDGE 360 LSEMLDKVLL GCGLGGQMSG CTPENMSQSK GPPGPKGGRV RRKKGNKSTA DLRSLLILCA 420 QAVSANDFRT AYELLKQIRQ DSSASGDGSQ RLAHYFANGL EARLAGSAGD RQTFFYSSEL 480 QKRTVADKLK AYQLHLSACP FKKLPILFAN VVLLKIAATA KVLHIIDFGI SFGFQWPILI 540 QELSKRDGGP PELRITGIEI PQSGFRPAER IEETGRRLAK YCERFKVPFE FHAIPSRNWE 600 CIRVEDLKIQ SGEIVAVNCL SRFKNLYDET VEVDCPRDAV LRLIRSIKPD VFVHGISNGS 660 YNAPFFLTRF REALFHLSAI YDMLDATVPS DNDQRVVVER EFYGREIMNV VACEGLERIE 720 RPETYKQWQV RVARAGFTQL PLDQEVMEMA RTKMSRHYPK DFVLAEESKW MLLGWRGRII 780 SACTCWVPI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-42 | 394 | 788 | 1 | 380 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B02337.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043529.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_010043530.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_010043531.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_010043532.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_018724294.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A059D475 | 0.0 | A0A059D475_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043529.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B02337.1.p |
Entrez Gene | 104432717 |
Publications ? help Back to Top | |||
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