PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B02330.1.p | ||||||||
Common Name | EUGRSUZ_B02330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 645aa MW: 72455.8 Da PI: 7.0535 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 332.4 | 8.2e-102 | 281 | 639 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL+ cA+avs++d++ a+ lL++++ +sp+g+ qR+a+yf+ AL+arla+ + + ++a+ s ++++++++l+a++l++ ++P+lkf Eucgr.B02330.1.p 281 LRSLLILCAQAVSTNDFKTARGLLKQIRRDSSPSGNGSQRVAHYFADALEARLAG-SAGRSQAFYYSVIQKRSVADKLKAYQLYYLACPFLKF 372 6899***************************************************.66677778777777789******************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 + l N +Il+++e+++ +HiiDf+i G+QWp L+q+L++R++g p+l e++e+tg+rLak++++++vpfef+++++ ++ Eucgr.B02330.1.p 373 QILFSNYMILKSAETAKVLHIIDFGIDCGFQWPILIQELSKRTGGVPKL-------------EKIEQTGHRLAKYCKRFNVPFEFQAVASANW 452 ******************************************8886655.............689**********************9999** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 e++e+ +L+++++E++aVn+ +l++l+de+v+++ +rd vL+l+ s++P+++++ ++ ++n++ F +rf ea + sa++d l++++ +++ Eucgr.B02330.1.p 453 ECIEVADLKIQSDEVVAVNCLARLENLYDETVKINCQRDMVLNLIGSMKPQIFIHGIKNGSYNAPFFITRFREAPFHLSAIYDLLDTTVVHNN 545 ********************************************************************************************* PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 +r+++Er + grei+n+vaceg er+er et+++W+ rl+++GF+++pl+++ +k+ ++ l+ + + +++eee+++++lgW++r + +++ Eucgr.B02330.1.p 546 VQRSVLERDVYGREIMNIVACEGLERVERPETYKQWQLRLTRVGFQQLPLDQELMKKTRAKLSGNYHKDFELEEENNWMLLGWRGRIISCCTC 638 ******************************************************************888************************ PP GRAS 373 W 373 W Eucgr.B02330.1.p 639 W 639 * PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 54.034 | 255 | 620 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-99 | 281 | 639 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 645 aa Download sequence Send to blast |
MEEQPWAVPN IVAIRHTEKS LYDALGKKYP DSPEQTEGVG TNQVINSSSW NPWGRRSDQG 60 SNGTTITSSN SCHPLDPNSH DDREGNNYAS IHAKSPGDVV LQSKVDCKFQ SSVNSVDSLP 120 KNGDNFCYSG PSEVLISPIF NNNESVVQFN KGLEEARKFI PSGIHITIGQ EKDGLAPTIR 180 DKEEIGIKGS HQSENGSRGR KNHESHSARF EEGPANKQLA SYNEDPELSD LLEKLLLSNK 240 NGGLLSLECK SEKLSEIKDP QDPNGTGDHS YKKGNESTLD LRSLLILCAQ AVSTNDFKTA 300 RGLLKQIRRD SSPSGNGSQR VAHYFADALE ARLAGSAGRS QAFYYSVIQK RSVADKLKAY 360 QLYYLACPFL KFQILFSNYM ILKSAETAKV LHIIDFGIDC GFQWPILIQE LSKRTGGVPK 420 LEKIEQTGHR LAKYCKRFNV PFEFQAVASA NWECIEVADL KIQSDEVVAV NCLARLENLY 480 DETVKINCQR DMVLNLIGSM KPQIFIHGIK NGSYNAPFFI TRFREAPFHL SAIYDLLDTT 540 VVHNNVQRSV LERDVYGREI MNIVACEGLE RVERPETYKQ WQLRLTRVGF QQLPLDQELM 600 KKTRAKLSGN YHKDFELEEE NNWMLLGWRG RIISCCTCWL STIV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-36 | 288 | 639 | 26 | 378 | Protein SCARECROW |
5b3h_A | 2e-36 | 288 | 639 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-36 | 288 | 639 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B02330.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043520.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_018724289.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_018724290.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_018724291.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
TrEMBL | A0A059D471 | 0.0 | A0A059D471_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043520.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-153 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B02330.1.p |