PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02328.1.p
Common NameEUGRSUZ_B02328, LOC104432712
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 709aa    MW: 80130.7 Da    PI: 5.9644
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02328.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.67e-1123377053373
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       +lL++cA+ v+s+d++  ++lL+++++++sp+gd +qRla yf+++L+arl+++ +  y+ l  + +s    +e l+++++f++++P+ ++s+
  Eucgr.B02328.1.p 337 TLLTQCAQSVASNDHRSSHELLKQIRQHSSPYGDGTQRLAYYFANGLEARLVGTETPSYSVLLGNGAS---AAEILKSYQVFVQACPFKRMSN 426
                       69***************************************************888888888777777...89******************** PP

              GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                       + aN++I++ +e+++r+HiiDf+i +G+QWp+L+q ++ R++gpp++R+Tg++ p++g   +e++eetg+rL+k+A++++v+fe++v +ak++
  Eucgr.B02328.1.p 427 FFANRTIMKRAEQARRLHIIDFGILYGFQWPCLIQRISRRQGGPPKIRMTGIEFPQPGfrPSERVEETGRRLEKYAKRFNVDFEYQV-IAKKW 518
                       *********************************************************9****************************9.7**** PP

              GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                       e+++le+L+++ +E+++Vn+ ++l++l desv ++s+rd+vL+l+++++P+++v+   + ++n++ F++rf eal ++s+lfd+++++l re+
  Eucgr.B02328.1.p 519 ETIQLEDLKLEGDEMTVVNCLHRLKNLADESVLMNSPRDAVLNLIRRINPDIFVHGVVNGSYNAPFFVTRFREALFHFSSLFDMFDVSLTRED 611
                       ********************************************************************************************* PP

              GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                        +r+  E+e+++r+++n++aceg++r+er et+++W+ r ++aGF+++pl++++  ++k  ++  + + + v+++  ++++gWk+r + ++S+
  Eucgr.B02328.1.p 612 PQRMLFEKEVFARDAMNAIACEGFARVERPETYKQWQIRNMRAGFRQIPLDDEIFRKVKKTVKVQYHRDFIVDQDGCWMLQGWKGRVIHALSC 704
                       ****************************************************************99999************************ PP

              GRAS 373 W 373
                       W
  Eucgr.B02328.1.p 705 W 705
                       * PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.868309686IPR005202Transcription factor GRAS
PfamPF035142.4E-109337705IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MESLLTEHSS SLNGFKFDHR SISIHPNCNL INGFKHDAEP DNPVSSASSL EVESPEDSDT  60
SNSILKFIGE MLMEEDLEEK NCMLQDCLAA LQAEEKNWRD VLYQKDTPSS EHSSPSVNQN  120
FMSRYYYYSP ENSNSDGCYN CAAVSNHVKF NGAHEQGNCN ASCAAVIDSP SSSYLDLDSY  180
SGIQAANELL LSRTTDILGV GSNRTVFPEP KEVVDHTGSE GEGSQCSPNR EKKSHGREDE  240
EYQQGGRSNK QSAIFVEEEF DEQTALFDKV LLCQGGIGDQ LCPLYDNPEK QENEELPRNV  300
PTKGSSGSSS SSSSNSSGKT SRRRKKGSGG DMVDLWTLLT QCAQSVASND HRSSHELLKQ  360
IRQHSSPYGD GTQRLAYYFA NGLEARLVGT ETPSYSVLLG NGASAAEILK SYQVFVQACP  420
FKRMSNFFAN RTIMKRAEQA RRLHIIDFGI LYGFQWPCLI QRISRRQGGP PKIRMTGIEF  480
PQPGFRPSER VEETGRRLEK YAKRFNVDFE YQVIAKKWET IQLEDLKLEG DEMTVVNCLH  540
RLKNLADESV LMNSPRDAVL NLIRRINPDI FVHGVVNGSY NAPFFVTRFR EALFHFSSLF  600
DMFDVSLTRE DPQRMLFEKE VFARDAMNAI ACEGFARVER PETYKQWQIR NMRAGFRQIP  660
LDDEIFRKVK KTVKVQYHRD FIVDQDGCWM LQGWKGRVIH ALSCWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-493397058374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02328.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043517.10.0PREDICTED: scarecrow-like protein 30
RefseqXP_010043518.10.0PREDICTED: scarecrow-like protein 30
RefseqXP_010043519.10.0PREDICTED: scarecrow-like protein 30
SwissprotQ9XE581e-177SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A059D5550.0A0A059D555_EUCGR; Uncharacterized protein
STRINGXP_010043517.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-175SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]