PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02261.1.p
Common NameEUGRSUZ_B02261
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 284aa    MW: 33590.4 Da    PI: 10.2031
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02261.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-087090526
                      --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       C+ f+r G+C +G+rCkF+H+
  Eucgr.B02261.1.p 70 VCHAFQR-GECTRGARCKFSHD 90
                      6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.7656592IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-46791IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-56890IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-57092IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-67090IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MPNTRTLRMR SSAAFPSISP KAISSRFLPN NLNGASILGR IIRVDHVSNY KKKEEEDEEE  60
EQRKRAERGV CHAFQRGECT RGARCKFSHD EQRAANTGWG AKDDDGQWGH DKFDGPERAH  120
KRSSGLSHNG LPESRTRDGH KSQSMDSSFT AKEREADHQG EEHRKSRRHD PDDFEQKSRG  180
KFDRREDKNF RRDGNNDNVE RGMKDRDRKE ERIKRYDDDH EPRRREDYDR REEKRSRRHD  240
DDDTKPRSRG SYERKEESRS KKHESDSRST YDRKPSSRHR KER*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02261.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010042478.11e-163PREDICTED: zinc finger CCCH domain-containing protein 25-like
RefseqXP_010043440.11e-163PREDICTED: zinc finger CCCH domain-containing protein 25
TrEMBLA0A059D4Z50.0A0A059D4Z5_EUCGR; Uncharacterized protein
STRINGXP_010042478.11e-162(Eucalyptus grandis)
STRINGXP_010043440.11e-162(Eucalyptus grandis)