PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B02144.1.p | ||||||||
Common Name | EUGRSUZ_B02144, LOC104435269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 27681.4 Da PI: 9.8589 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++q+G +W++ +r g+ R++k+c++rw +yl Eucgr.B02144.1.p 14 KGPWTPEEDQILISHIHQFGHSNWRALPRQAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 4e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E + ++++++ lG++ W++Ia++++ gRt++++k++w+++l Eucgr.B02144.1.p 67 RGNFTDDERDTIIQLHQVLGNR-WSAIASRLP-GRTDNEIKNFWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.012 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.36E-30 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.17E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.701 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-26 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.79E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MARTPCCEKM GMKKGPWTPE EDQILISHIH QFGHSNWRAL PRQAGLLRCG KSCRLRWINY 60 LRPDVKRGNF TDDERDTIIQ LHQVLGNRWS AIASRLPGRT DNEIKNFWHT HLKKRVPHSL 120 PNSTPFTINP TRCTTLDPSF QNPTSAPPTQ KFQEPLTTSE TESGPSIAVQ ANIESSSQAV 180 PSSRASQKLE KTKKDLIAGS APAFPMAAGS QCGGQGVLSM KGDKDMEFWY SLLVRAGDGH 240 HQVGNAAGTL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 12 | 116 | 5 | 108 | B-MYB |
1h8a_C | 6e-28 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B02144.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010046353.1 | 0.0 | PREDICTED: myb-related protein Myb4 | ||||
Swissprot | Q9SJX8 | 4e-73 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | A0A059D482 | 0.0 | A0A059D482_EUCGR; Uncharacterized protein | ||||
STRING | XP_010046353.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 3e-74 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B02144.1.p |
Entrez Gene | 104435269 |
Publications ? help Back to Top | |||
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