PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B02000.1.p

Common Name

EUGRSUZ_B02000, LOC104432339

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 289aa MW: 32545.6 Da PI: 5.607

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B02000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.9	4.8e-15	92	143	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r+ah + Er+RR+++N+ ++ Lr+l+P + + +K++ a+i A++Y+k+L+ Eucgr.B02000.1.p 92 QRMAHIATERNRRKQMNEHLSVLRSLMPDS---HVQKVDQASIIGGAINYVKELE 143 79**************************...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.66E-15	90	147	No hit	No description
SuperFamily	SSF47459	1.83E-18	90	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.329	91	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-12	92	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	92	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-13	97	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MALEAVVFPD DPFNYYNCKE VQSLLGECWS FDFGDQEQCE NSHFLSTLEI QTEDHECSGW 60 NHQSNVSSKA LIDRPKRCRY KRRKNKKEME SQRMAHIATE RNRRKQMNEH LSVLRSLMPD 120 SHVQKVDQAS IIGGAINYVK ELEQQLQQLG AHKEMEGQSS KCEDDISSPP FSEFFTCPQY 180 SASPGQGNDS VPMNEWTSLT QSAIADIEVT MVETHANLKV RSKRRPKQLL RLVSGLQSVG 240 LTVLHLNVTT AEPFVLYCLT LKVEDGCQMT SGDEIAAAAN QILSSIQE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	103	RMAHIATERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B02000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043101.1	0.0	PREDICTED: transcription factor bHLH96 isoform X2
TrEMBL	A0A059D3J2	0.0	A0A059D3J2_EUCGR; Uncharacterized protein
STRING	XP_010043100.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1116	27	102

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	9e-67	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.B02000.1.p
Entrez Gene	104432339