PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B01964.1.p | ||||||||
Common Name | EUGRSUZ_B01964, LOC104432321 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 199aa MW: 23175.2 Da PI: 10.3862 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.9 | 1.5e-20 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+++++ +G+++Wk++a++ g++R++k+c++rw++yl Eucgr.B01964.1.p 17 RGAWTPEEDQKLARVIETHGPRRWKLVAAKAGLNRCGKSCRLRWLNYL 64 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50 | 6.7e-16 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Eucgr.B01964.1.p 70 RGNISDQEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 115 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.894 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.42E-29 | 16 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-17 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-20 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-26 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.53E-12 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 20.896 | 69 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 70 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-25 | 72 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.27E-10 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MPMAPTRSRY SKREANRGAW TPEEDQKLAR VIETHGPRRW KLVAAKAGLN RCGKSCRLRW 60 LNYLRPNIKR GNISDQEEDL ILRLHRLLGN RWSLIAGRLP GRTDNEIKNY WNSHLSKKIK 120 QKENQSKSPE QDQSQDLRNS AARMHSMAGN NGETSKRDEV MKTDFSRNEI LDSFDEGPLN 180 LEWMSRFLEM DESWFSFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-29 | 14 | 119 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-29 | 14 | 121 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-29 | 14 | 121 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-29 | 17 | 119 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-29 | 17 | 119 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B01964.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043080.1 | 1e-146 | PREDICTED: transcription factor MYB114 | ||||
Swissprot | P10290 | 2e-50 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
Swissprot | Q9SEI0 | 4e-51 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A059D3X3 | 1e-144 | A0A059D3X3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043080.1 | 1e-145 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 2e-53 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B01964.1.p |
Entrez Gene | 104432321 |