PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01936.1.p
Common NameEUGRSUZ_B01936, LOC104432299
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 486aa    MW: 52859.4 Da    PI: 8.8992
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01936.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-0594116123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C+k F r  nL+ H r H
  Eucgr.B01936.1.p  94 FVCEICNKGFQRDQNLQLHRRGH 116
                       89*******************88 PP
2zf-C2H211.30.0011170192123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC+ C+k +  +s+ k H +t+
  Eucgr.B01936.1.p 170 WKCERCSKKYAVQSDWKAHSKTC 192
                       58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-593116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.82E-793116No hitNo description
PfamPF121717.7E-594116IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01794116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94994116IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SMARTSM00355220135165IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.7E-4158191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.82E-7165190No hitNo description
SMARTSM00355230170190IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MSNITGEGGS FSSGNTGEAE VQPQELLNHL FGANNSLLSS ASANNDSLSA STHDEKPQQQ  60
APQAKKKRSL PGNPDPSAEV IALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW  120
KLKQRGSAEI RKRVYVCPEP SCVHHNPARA LGDLTGIKKH FCRKHGEKKW KCERCSKKYA  180
VQSDWKAHSK TCGTREYKCD CGTIFSRRDS FITHRAFCDA LTEENTKLNQ ALAPHLPSSV  240
GQQPNNLSSS SVPLSQAQSN TIPSTEAPEF ANHADTKPPL FSLPQGLILH QSKPMTMPQT  300
LFSGNNLFGT TNARTVAPPP ISPSLIHGMN SPQRGSAFMS ATALLQKAAQ MGATVSNNSA  360
TSFVSAPMAP SSFGGMLPKQ AQHNGGFVDR FMEKGQEEIS EQFMNNVNNG SDREGVFSGL  420
LGQNSHDFLK SLEVDHGKTT TVDFLGIGGT RSAGNLHEGQ REMPLKGFMS QFQPQSTMEK  480
PMWEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35166229366Zinc finger protein JACKDAW
5b3h_F2e-35166229366Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01936.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043069.10.0PREDICTED: protein indeterminate-domain 2
TrEMBLA0A059D3V80.0A0A059D3V8_EUCGR; Uncharacterized protein
STRINGXP_010043069.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-109C2H2 family protein